PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf09133g01003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C3H | ||||||||
Protein Properties | Length: 187aa MW: 19613.5 Da PI: 9.727 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 37.8 | 3.1e-12 | 131 | 155 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC +fa+ G C +GdrC+FaHg Niben101Scf09133g01003.1 131 FKTKLCENFAK-GSCTFGDRCHFAHG 155 69*********.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54791 | 2.05E-15 | 32 | 108 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 7.1E-12 | 36 | 106 | IPR004087 | K Homology domain |
Gene3D | G3DSA:3.30.1370.10 | 2.1E-16 | 37 | 106 | IPR004088 | K Homology domain, type 1 |
PROSITE profile | PS50084 | 14.236 | 37 | 101 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 1.27E-12 | 39 | 101 | No hit | No description |
Pfam | PF00013 | 1.4E-11 | 39 | 103 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-16 | 126 | 161 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.596 | 130 | 157 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.7E-8 | 130 | 156 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.15E-9 | 130 | 160 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.8E-10 | 131 | 155 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MPSQEEPRAM GVGPVPGRFG GRIEPAVSGP AASFGTSATA KISVDASLAG AIIGKGGVHS 60 KQICRQTGAK LAIRDHETDK NLRNIELEGT FEQISQASAM VRELINSLGS VGCPGRTPVV 120 PGGAAPPGSN FKTKLCENFA KGSCTFGDRC HFAHGAAELR KTGKIYEKNG CRKVDFTKLI 180 MIEKITS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019266162.1 | 1e-111 | PREDICTED: zinc finger CCCH domain-containing protein 14-like | ||||
Swissprot | Q9FG30 | 1e-60 | C3H52_ARATH; Zinc finger CCCH domain-containing protein 52 | ||||
TrEMBL | A0A314L168 | 1e-109 | A0A314L168_NICAT; Zinc finger ccch domain-containing protein 14 | ||||
STRING | XP_009767111.1 | 1e-109 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA845 | 24 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 2e-57 | C3H family protein |
Publications ? help Back to Top | |||
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