PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf09130g00007.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRF
Protein Properties Length: 349aa    MW: 39079.3 Da    PI: 7.7986
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf09130g00007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.42.9e-2478122145
                       WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                               d+epgrCrRtDGKkWRCs+++++++k+CErH++rgr+rsrk++e+
  Niben101Scf09130g00007.1  78 DPEPGRCRRTDGKKWRCSKDAYPDSKYCERHMNRGRNRSRKHVES 122
                               79****************************************986 PP
2QLQ64.52.6e-221752237
                       QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                              +FTa Q+q+L++Q+++yKyL+a+ PvPp+L+++i++
  Niben101Scf09130g00007.1 17 PFTAVQWQELEHQAMIYKYLVAGIPVPPDLVVPIRR 52
                              9*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009517.5E-131652IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.7E-161751IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.8841752IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.9878122IPR014977WRC domain
PfamPF088792.6E-2079121IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MSETTMRTVA EDGYRPPFTA VQWQELEHQA MIYKYLVAGI PVPPDLVVPI RRSFEAISAR  60
FFHHTSLGYC SYYGKKFDPE PGRCRRTDGK KWRCSKDAYP DSKYCERHMN RGRNRSRKHV  120
ESQSTSQSLL TSMSNNATGS SKTSGNFQSS SSGSLQNMPL YSAAYSEGPN YGSTGTKMQM  180
EPVSYGIDNK AYRYFHGMAA DADEQNFSLE ASASMRSLGM GSNADSTWCL TPQLSSNPTV  240
KPKNETQLLY GSPQTRLPHP FEPMIDATIS KQQQHCFFGS DIGSPGTVKQ EERSMRPFFD  300
EWPTANESWS NLDDEGSNKN NFSSTQLSIS IPIAPSDFFS RSSCSRNDV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019260216.10.0PREDICTED: growth-regulating factor 4-like
TrEMBLA0A314LCP70.0A0A314LCP7_NICAT; Growth-regulating factor 4
STRINGXP_009790531.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7432384
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.11e-49growth-regulating factor 5