PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf09078g01001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 434aa MW: 48014.6 Da PI: 9.9855 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22 | 3.9e-07 | 108 | 150 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT+eE ++l d++k++ + + Ia ++ +Rt +++k+r+++ Niben101Scf09078g01001.1 108 SWTKEETDQLFDLCKRFDLR-FIIIADRFSSNRTVEELKDRYYS 150 7*******************.*********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF16282 | 2.7E-31 | 81 | 155 | IPR032563 | DAMP1, SANT/Myb-like domain |
SuperFamily | SSF46689 | 9.79E-7 | 103 | 157 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.2E-7 | 105 | 154 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-5 | 108 | 152 | IPR009057 | Homeodomain-like |
CDD | cd11658 | 2.08E-18 | 109 | 151 | No hit | No description |
Pfam | PF05499 | 4.4E-6 | 301 | 364 | IPR008468 | DNA methyltransferase 1-associated 1 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0000812 | Cellular Component | Swr1 complex | ||||
GO:0035267 | Cellular Component | NuA4 histone acetyltransferase complex | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 434 aa Download sequence Send to blast |
MDAKDILGLP KNGPIMSQEK KSRPQKESQR KPEGISREVY ALTGGIAPLM PSLDINQLKR 60 KALSEAEKVR VVNGVPPTGD YSFAKFNKSV DVLEYTNDEY EKFLSDPSWT KEETDQLFDL 120 CKRFDLRFII IADRFSSNRT VEELKDRYYS VSRAITTARA ASPADVAGHP LVKEPYNISQ 180 ERERKRALSM VLSQTKLQER RDAEVLAEAK RISVARKSVK VIAFSQAAEE TELPVVSDAG 240 PEGAEKAAGI DGISTSPNAQ LPSGFAAPPV SETASTVASL RMLRVYLRTY ALDQMVQAAS 300 SSAGLRTIKR VEQTLQDLGV NLKPKVPTKL VCAEHLELRK EILTLLNLQK QLQYKEAEGS 360 SYREGSYSET PGTPPKVGML RAQQDRTFIP DSTSFGGDRV GKRDQKRKGP GRLSEVPSSP 420 AQSKRPRKLK TSDG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3hm5_A | 3e-23 | 80 | 165 | 4 | 93 | DNA methyltransferase 1-associated protein 1 |
4iej_A | 3e-23 | 80 | 165 | 4 | 93 | DNA methyltransferase 1-associated protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. {ECO:0000305|Ref.5}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009798987.1 | 0.0 | PREDICTED: DNA methyltransferase 1-associated protein 1 | ||||
Refseq | XP_009798988.1 | 0.0 | PREDICTED: DNA methyltransferase 1-associated protein 1 | ||||
Refseq | XP_016482286.1 | 0.0 | PREDICTED: SWR1-complex protein 4-like | ||||
Refseq | XP_016482287.1 | 0.0 | PREDICTED: SWR1-complex protein 4-like | ||||
Swissprot | Q8VZL6 | 0.0 | SWC4_ARATH; SWR1-complex protein 4 | ||||
TrEMBL | A0A1S4B022 | 0.0 | A0A1S4B022_TOBAC; SWR1-complex protein 4-like | ||||
TrEMBL | A0A1U7Y4E2 | 0.0 | A0A1U7Y4E2_NICSY; DNA methyltransferase 1-associated protein 1 | ||||
STRING | XP_009798987.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7626 | 15 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47210.1 | 0.0 | MYB_related family protein |
Publications ? help Back to Top | |||
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