PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf09078g01001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 434aa    MW: 48014.6 Da    PI: 9.9855
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf09078g01001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding223.9e-07108150346
                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                               +WT+eE ++l d++k++  + +  Ia ++  +Rt +++k+r+++
  Niben101Scf09078g01001.1 108 SWTKEETDQLFDLCKRFDLR-FIIIADRFSSNRTVEELKDRYYS 150
                               7*******************.*********************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF162822.7E-3181155IPR032563DAMP1, SANT/Myb-like domain
SuperFamilySSF466899.79E-7103157IPR009057Homeodomain-like
SMARTSM007173.2E-7105154IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-5108152IPR009057Homeodomain-like
CDDcd116582.08E-18109151No hitNo description
PfamPF054994.4E-6301364IPR008468DNA methyltransferase 1-associated 1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0000812Cellular ComponentSwr1 complex
GO:0035267Cellular ComponentNuA4 histone acetyltransferase complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MDAKDILGLP KNGPIMSQEK KSRPQKESQR KPEGISREVY ALTGGIAPLM PSLDINQLKR  60
KALSEAEKVR VVNGVPPTGD YSFAKFNKSV DVLEYTNDEY EKFLSDPSWT KEETDQLFDL  120
CKRFDLRFII IADRFSSNRT VEELKDRYYS VSRAITTARA ASPADVAGHP LVKEPYNISQ  180
ERERKRALSM VLSQTKLQER RDAEVLAEAK RISVARKSVK VIAFSQAAEE TELPVVSDAG  240
PEGAEKAAGI DGISTSPNAQ LPSGFAAPPV SETASTVASL RMLRVYLRTY ALDQMVQAAS  300
SSAGLRTIKR VEQTLQDLGV NLKPKVPTKL VCAEHLELRK EILTLLNLQK QLQYKEAEGS  360
SYREGSYSET PGTPPKVGML RAQQDRTFIP DSTSFGGDRV GKRDQKRKGP GRLSEVPSSP  420
AQSKRPRKLK TSDG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3hm5_A3e-2380165493DNA methyltransferase 1-associated protein 1
4iej_A3e-2380165493DNA methyltransferase 1-associated protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. {ECO:0000305|Ref.5}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009798987.10.0PREDICTED: DNA methyltransferase 1-associated protein 1
RefseqXP_009798988.10.0PREDICTED: DNA methyltransferase 1-associated protein 1
RefseqXP_016482286.10.0PREDICTED: SWR1-complex protein 4-like
RefseqXP_016482287.10.0PREDICTED: SWR1-complex protein 4-like
SwissprotQ8VZL60.0SWC4_ARATH; SWR1-complex protein 4
TrEMBLA0A1S4B0220.0A0A1S4B022_TOBAC; SWR1-complex protein 4-like
TrEMBLA0A1U7Y4E20.0A0A1U7Y4E2_NICSY; DNA methyltransferase 1-associated protein 1
STRINGXP_009798987.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA76261515
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47210.10.0MYB_related family protein
Publications ? help Back to Top
  1. Gómez-Zambrano Á, et al.
    Arabidopsis SWC4 Binds DNA and Recruits the SWR1 Complex to Modulate Histone H2A.Z Deposition at Key Regulatory Genes.
    Mol Plant, 2018. 11(6): p. 815-832
    [PMID:29604400]