PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf09004g00003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 166aa    MW: 18994.4 Da    PI: 6.8248
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf09004g00003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2651.5e-2086135255
                       AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               +ykGVr++k +g+WvAe+rd      k+ r++lg+f+taeeAa a+++a  +++g
  Niben101Scf09004g00003.1  86 KYKGVRQRK-WGKWVAEVRDtR----KKNRIWLGTFDTAEEAALAYDKAVIEMRG 135
                               8*******9.*******99933....359***********************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.73E-3086141No hitNo description
PROSITE profilePS5103221.58886143IPR001471AP2/ERF domain
SMARTSM003801.4E-3486149IPR001471AP2/ERF domain
PfamPF008471.6E-1586135IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-2186142IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.9E-2986141IPR001471AP2/ERF domain
PRINTSPR003673.3E-118798IPR001471AP2/ERF domain
PRINTSPR003673.3E-11109125IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MDSKEEHQQN EAIEKPSKST NQAGESSAIL PPLVRMHEEE EKAEGEKSER HEKASEKAII  60
IQNEETEVIS KEKTKEKKLM QRNANKYKGV RQRKWGKWVA EVRDTRKKNR IWLGTFDTAE  120
EAALAYDKAV IEMRGVDAIT NILKPPPKEI NFINPPPSSS EDDARV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-20851511376Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009783397.11e-89PREDICTED: ethylene-responsive transcription factor ERF069-like
SwissprotP930076e-24EF112_ARATH; Ethylene-responsive transcription factor ERF112
TrEMBLA0A1U7WU032e-88A0A1U7WU03_NICSY; ethylene-responsive transcription factor ERF069-like
STRINGXP_009783397.14e-89(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.14e-26ERF family protein