PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf08965g00003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 190aa    MW: 21647.2 Da    PI: 5.0148
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf08965g00003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.2e-1855106256
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                               +y GVr ++ +g+++AeIrd  ++  +  r++lg+f+ aeeAa a+++a+ +++g+
  Niben101Scf08965g00003.1  55 KYIGVRKRP-WGKYAAEIRDS-TR--NaIRVWLGTFDNAEEAAMAYDQAAFSMRGA 106
                               89*******.**********3.32..34*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.97E-2854114No hitNo description
Gene3DG3DSA:3.30.730.102.1E-2955114IPR001471AP2/ERF domain
PROSITE profilePS5103221.48355113IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-2155115IPR016177DNA-binding domain
PfamPF008471.4E-1255105IPR001471AP2/ERF domain
SMARTSM003806.4E-3255119IPR001471AP2/ERF domain
PRINTSPR003673.2E-95667IPR001471AP2/ERF domain
PRINTSPR003673.2E-97995IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MEHLKNQYQE QTSNVSIVDE VKVKIEAESS IETISSIERE TNDEEVNFNP RNPQKYIGVR  60
KRPWGKYAAE IRDSTRNAIR VWLGTFDNAE EAAMAYDQAA FSMRGAQTCL NFPVEKVRES  120
LQKMECNNLN DGLLSPAAAL KEKHKKRNSS SSRKKQVNIK EQENVLIFED LGPDLLDELL  180
SSENSSCSIY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-27551151474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142154KHKKRNSSSSRKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00286DAPTransfer from AT2G31230Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016464424.11e-129PREDICTED: ethylene-responsive transcription factor 15-like
SwissprotA0A3Q7I5Y93e-50ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLA0A1S3ZJ471e-127A0A1S3ZJ47_TOBAC; ethylene-responsive transcription factor 15-like
STRINGXP_009804882.11e-127(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31230.16e-30ethylene-responsive element binding factor 15
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]