PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf08876g00008.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 379aa    MW: 42715.6 Da    PI: 8.6527
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf08876g00008.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.41.1e-1049105155
                       AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                               s y+GV++++++gr++A+++d  ++n  ++k+ + g ++ +  Aa a++ a++k++g
  Niben101Scf08876g00008.1  49 SIYRGVTRHRWTGRYEAHLWDkNCWNEsQNKKGRQGAYDDEGAAAHAYDLAALKYWG 105
                               57*******************99998898888888*****5699***********98 PP
2AP235.32.9e-11162210455
                       AP2   4 kGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               +GV+ ++   rW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Niben101Scf08876g00008.1 162 RGVSKYRGVARWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 210
                               78877666678999998856...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.1E-749105IPR001471AP2/ERF domain
SuperFamilySSF541715.89E-1449115IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.7E-1250114IPR001471AP2/ERF domain
PROSITE profilePS5103217.8250113IPR001471AP2/ERF domain
SMARTSM003804.9E-1950119IPR001471AP2/ERF domain
PRINTSPR003676.1E-65162IPR001471AP2/ERF domain
PRINTSPR003676.1E-695115IPR001471AP2/ERF domain
CDDcd000182.39E-21148220No hitNo description
PROSITE profilePS5103216.674149218IPR001471AP2/ERF domain
SMARTSM003801.8E-18149224IPR001471AP2/ERF domain
PfamPF008471.9E-7162210IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-13162219IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-15162220IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MAKLSQQNQR NTSNNSIANI NITTTNGSVL KVKRTRKTVP RDSPPQRSSI YRGVTRHRWT  60
GRYEAHLWDK NCWNESQNKK GRQGAYDDEG AAAHAYDLAA LKYWGSETIL NFPLSTYEKE  120
IMEMEGQSRE EYIGSLRRKS SGFSRGVSKY RGVARKSSGF SRGVSKYRGV ARWEARIGRV  180
FGNKYLYLGT YATQEEAATA YDMAAIEYRG LNAVTNFDLS RYIKWLKPNN NNTIDQLNPH  240
VETNTMPTPN HNIGSTTTTT TSTSASASAA LIYSHFELTS NITMPDVSVP QIRPPSTTSA  300
LGLLLQSTKF KEMMEMTLAA ECPSEPVEFC DPPQSNFPED IKTYFDTQEY GGHDQGEDVN  360
IFNEINSFMQ PLLQFDFNA
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009793520.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-101AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A1U7Y4120.0A0A1U7Y412_NICSY; AP2-like ethylene-responsive transcription factor At1g16060
STRINGXP_009793520.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18152464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.11e-92ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]