PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf08840g00003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 296aa    MW: 32197.3 Da    PI: 6.3634
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf08840g00003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.52.2e-15129177255
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                ++G+r  +++g+Wv+eIr+p++   ++r++lg++ t+e+Aa+a++ a+ +l+g
  Niben101Scf08840g00003.1 129 VFRGIR--SRSGKWVSEIREPRK---TTRIWLGTYPTPEMAAAAYDVAAVALKG 177
                               589996..678*********843...5**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103219.704129185IPR001471AP2/ERF domain
SMARTSM003801.2E-27129193IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-25129185IPR001471AP2/ERF domain
SuperFamilySSF541715.1E-17130186IPR016177DNA-binding domain
CDDcd000181.02E-15130185No hitNo description
PfamPF008472.6E-8131177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MKNTHTYIYI PINKRTHKHS IYIYIYIYMA DQPADDSTKT SQKNQPPRPS ESSQTPFCPI  60
PPPLLPPQPV EETNISPRPL ISNVTILENT KSPPKTLQLQ NIIPTVTTTM SSTSSGGSPN  120
RPTGRKHHVF RGIRSRSGKW VSEIREPRKT TRIWLGTYPT PEMAAAAYDV AAVALKGSDA  180
VVNFPGNLTS YPSLPPSPSP GDIIKAAATA AALMKPQTGE GTMPTQPGNV NDQSSGNAQM  240
METGGDEYID EEALFDMPNL LVDMAEAMMV SPPRMNSSPP SDDSPGNSDA ESLWSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-13120185572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016508571.11e-130PREDICTED: ethylene-responsive transcription factor ERF027-like
SwissprotQ9FJ901e-47ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A1S4D5B31e-129A0A1S4D5B3_TOBAC; ethylene-responsive transcription factor ERF027-like
STRINGXP_009764333.11e-122(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55322110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.15e-34ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]