PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf08811g00005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 509aa    MW: 57144.4 Da    PI: 5.8191
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf08811g00005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS423.61.7e-12916350925374
                      GRAS  25 arlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavege 109
                               ++l++ +s  g+p+qRl ay++e+L arla+s+s++yk+l+++e +   s+e +++++l++e++P++kf++l aN aI++av++e
  Niben101Scf08811g00005.1 163 SELRTVVSVCGSPIQRLGAYMLEGLVARLASSGSSIYKSLRCKEPT---SVELMSYMHLLYEICPYFKFGYLSANGAIVDAVKEE 244
                               3677789**************************************9...9*********************************** PP

                      GRAS 110 ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                               +++HiiDf+isqG QW++L++aLa+Rp+gpp++RiTg++++ s   +   +e +g+rL+++A++++vpfef++ va ++ d+e+e
  Niben101Scf08811g00005.1 245 NTIHIIDFQISQGSQWITLIHALAARPGGPPRIRITGIDDSMSAyaRGGGIEIVGRRLSSIAASCNVPFEFHP-VAASCLDVEIE 328
                               ****************************************888788999************************.799999***** PP

                      GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                               +L+v++gE laVn++l lh+++desv ++++rd++L++vkslsPk+v++veqe+++n+ +F+ rfle+l+yy ++f+s+++ lpr
  Niben101Scf08811g00005.1 329 HLKVRRGEPLAVNFALVLHHMPDESVGTQNHRDRLLRMVKSLSPKIVTLVEQESNTNTVQFFPRFLETLNYYLSIFESIDVALPR 413
                               ************************************************************************************* PP

                      GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362
                               ++++ri+vE+++l+reivn++acegaer+erhe le+Wr+r+ +aGF+p+pls+++++++k+ll+++++  y+++e++g+l+lgW
  Niben101Scf08811g00005.1 414 NHKQRINVEQHCLAREIVNIIACEGAERVERHELLERWRSRFLMAGFNPYPLSSSVNATIKTLLENYYQS-YTLDERNGALYLGW 497
                               ********************************************************************55.************** PP

                      GRAS 363 kdrpLvsvSaWr 374
                               ++r Lv+ +aW+
  Niben101Scf08811g00005.1 498 MNRDLVASCAWK 509
                               ***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.644111490IPR005202Transcription factor GRAS
PfamPF035145.7E-127163509IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MRPSQNAKDI NEFNGFYDQP VQDQESFFLP SINNPKNNQL LYADCGQQTQ FSALKHNQYC  60
YVESSTGNSS ELVSDSPPVD TFFADDNSMM HQGSDSCPSY MHHSPNDTYH SSRNSSCFTS  120
DGTGLKHKLK ELETAMLGPD SESLEESYNT TPLAEANQIS SESELRTVVS VCGSPIQRLG  180
AYMLEGLVAR LASSGSSIYK SLRCKEPTSV ELMSYMHLLY EICPYFKFGY LSANGAIVDA  240
VKEENTIHII DFQISQGSQW ITLIHALAAR PGGPPRIRIT GIDDSMSAYA RGGGIEIVGR  300
RLSSIAASCN VPFEFHPVAA SCLDVEIEHL KVRRGEPLAV NFALVLHHMP DESVGTQNHR  360
DRLLRMVKSL SPKIVTLVEQ ESNTNTVQFF PRFLETLNYY LSIFESIDVA LPRNHKQRIN  420
VEQHCLAREI VNIIACEGAE RVERHELLER WRSRFLMAGF NPYPLSSSVN ATIKTLLENY  480
YQSYTLDERN GALYLGWMNR DLVASCAWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-6314650828378Protein SCARECROW
5b3h_A2e-6314650827377Protein SCARECROW
5b3h_D2e-6314650827377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009804325.10.0PREDICTED: scarecrow-like transcription factor PAT1
RefseqXP_009804326.10.0PREDICTED: scarecrow-like transcription factor PAT1
RefseqXP_016487146.10.0PREDICTED: scarecrow-like transcription factor PAT1
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A1S4BEA60.0A0A1S4BEA6_TOBAC; scarecrow-like transcription factor PAT1
TrEMBLA0A1U7YQT40.0A0A1U7YQT4_NICSY; scarecrow-like transcription factor PAT1
STRINGXP_009804325.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68124111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]