PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf08791g02002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | Dof | ||||||||
Protein Properties | Length: 385aa MW: 42439.7 Da PI: 8.4778 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 123.7 | 6.1e-39 | 53 | 113 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++ lkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+ + Niben101Scf08791g02002.1 53 QQPPLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRIK 113 56789*****************************************************875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 2.2E-33 | 56 | 111 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 3.0E-27 | 57 | 111 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.525 | 57 | 111 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 59 | 95 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 385 aa Download sequence Send to blast |
MLRDCEKMVL IPSSTTNEWP QQNIQSDEKI LMMSSNGGSD MEKPIQDQQQ QQQQPPLKCP 60 RCDSSNTKFC YYNNYSLSQP RHFCKACKRY WTRGGTLRNV PVGGGCRKNK RIKRPSASSS 120 SPHDITTTSS SALNNTISAT NPSHHHNHIH GSHNIDISST TSSNHLNPLF YGLNTERSDL 180 NNNPFARLFS SRVSNATGEG QVYSLTDSIP GLDRRLGLGF SSSSGLMGEN NYGHGFNSIK 240 QIQDVMTNSN TTNSSSLLSS YPMFGSSSTS SSFSTMASLI ASSLQQQKFM SNGNNFYGLA 300 PYEELQMSGN NNNTNNVEGG NGMTMVKKEK MEGGGQNRLN WNNHSNHQNH QIHEQIMNST 360 DPSLSWNGAW LDPSNMGSNS VPSLI |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016441727.1 | 0.0 | PREDICTED: dof zinc finger protein DOF1.4-like | ||||
TrEMBL | A0A1S3XPZ3 | 0.0 | A0A1S3XPZ3_TOBAC; dof zinc finger protein DOF1.4-like | ||||
STRING | XP_009623141.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA88 | 24 | 419 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28310.1 | 9e-37 | Dof family protein |