PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Niben101Scf08724g03009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 571aa MW: 63386.4 Da PI: 8.8417 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54 | 3.8e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +++++G+g+W++++ g+ R+ k+c++rw +yl Niben101Scf08724g03009.1 14 KGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 48.5 | 2e-15 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+ E++ ++++ ++lG++ W++Ia++++ Rt++++k++w+++l Niben101Scf08724g03009.1 67 RGNFTEHEEKMIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112 89********************.*********.************996 PP | |||||||
3 | Myb_DNA-binding | 48.5 | 2e-15 | 280 | 325 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+ E++ ++++ ++lG++ W++Ia++++ Rt++++k++w+++l Niben101Scf08724g03009.1 280 RGNFTEHEEKMIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 325 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.7E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.328 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.33E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.2E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.48E-10 | 16 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-24 | 65 | 117 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.609 | 66 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 1.5E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.1E-14 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.14E-10 | 69 | 112 | No hit | No description |
PROSITE profile | PS50090 | 4.135 | 261 | 274 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 4.0E-10 | 261 | 285 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.62E-20 | 261 | 331 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 23.904 | 275 | 329 | IPR017930 | Myb domain |
SMART | SM00717 | 1.5E-15 | 279 | 327 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.1E-14 | 280 | 325 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.14E-10 | 282 | 325 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-20 | 286 | 330 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0001666 | Biological Process | response to hypoxia | ||||
GO:0009617 | Biological Process | response to bacterium | ||||
GO:0009626 | Biological Process | plant-type hypersensitive response | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0042761 | Biological Process | very long-chain fatty acid biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 571 aa Download sequence Send to blast |
MGRPPCCEKA GVKKGPWTPE EDIILVSYIQ EHGPGNWRAV PTNTGLLRCS KSCRLRWTNY 60 LRPGIKRGNF TEHEEKMIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLNKKF 120 EGHDQEGKSS SSSSSQSKIS KGQWERRLQT DIHMAKQALC EALSLDTTPS TGDSPNNNSN 180 SSPNLPVQEP IQTSTTFASS ADNIAKLLQK WMKNSPQSSS QLSRSTSKMS SFNYPPIGAV 240 SSSSPSEGTI NNATTQEGLL RCSKSCRLRW TNYLRPGIKR GNFTEHEEKM IIHLQALLGN 300 RWAAIASYLP QRTDNDIKNY WNTHLKKKLN KKFEGHDQEG KSSSSSSSQS KISKGQWERR 360 LQTDIHMAKQ ALCEALSLDT TPSTGDSPNN NSNSSPNLPV QEPIQTSTTF ASSADNIAKL 420 LQKWMKNSPQ SSSQLSRSTS KMSSFNYPPI GAVSSSSPSE GTINNATTQE GLDSLFNFNS 480 SNNSDVSQSM SVDEGGNFTP ENNNAAIFQV ESKQNFKAEI NGSFHQEESK PNLETQVPFT 540 FLEKWLLDDN SNAQAQEELM GMALGETADL F |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 6e-24 | 14 | 329 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 6e-24 | 14 | 329 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00386 | DAP | Transfer from AT3G28910 | Download |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009760429.1 | 1e-179 | PREDICTED: myb-related protein 306-like | ||||
Swissprot | P81392 | 1e-115 | MYB06_ANTMA; Myb-related protein 306 | ||||
TrEMBL | A0A1U7VDP0 | 1e-177 | A0A1U7VDP0_NICSY; myb-related protein 306-like | ||||
STRING | XP_009760429.1 | 1e-178 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G28910.1 | 2e-98 | myb domain protein 30 |
Publications ? help Back to Top | |||
---|---|---|---|
|