PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf08724g03009.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 571aa    MW: 63386.4 Da    PI: 8.8417
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf08724g03009.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding543.8e-171461148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g+WT+eEd +lv +++++G+g+W++++   g+ R+ k+c++rw +yl
  Niben101Scf08724g03009.1 14 KGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYL 61
                              79******************************99************97 PP

2Myb_DNA-binding48.52e-1567112148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               rg++T+ E++ ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
  Niben101Scf08724g03009.1  67 RGNFTEHEEKMIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112
                               89********************.*********.************996 PP

3Myb_DNA-binding48.52e-15280325148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               rg++T+ E++ ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
  Niben101Scf08724g03009.1 280 RGNFTEHEEKMIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 325
                               89********************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.7E-24564IPR009057Homeodomain-like
PROSITE profilePS5129424.328965IPR017930Myb domain
SuperFamilySSF466893.33E-3011108IPR009057Homeodomain-like
SMARTSM007172.0E-141363IPR001005SANT/Myb domain
PfamPF002497.2E-161461IPR001005SANT/Myb domain
CDDcd001671.48E-101661No hitNo description
Gene3DG3DSA:1.10.10.601.6E-2465117IPR009057Homeodomain-like
PROSITE profilePS5129419.60966116IPR017930Myb domain
SMARTSM007171.5E-1566114IPR001005SANT/Myb domain
PfamPF002495.1E-1467112IPR001005SANT/Myb domain
CDDcd001672.14E-1069112No hitNo description
PROSITE profilePS500904.135261274IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.604.0E-10261285IPR009057Homeodomain-like
SuperFamilySSF466892.62E-20261331IPR009057Homeodomain-like
PROSITE profilePS5129423.904275329IPR017930Myb domain
SMARTSM007171.5E-15279327IPR001005SANT/Myb domain
PfamPF002495.1E-14280325IPR001005SANT/Myb domain
CDDcd001672.14E-10282325No hitNo description
Gene3DG3DSA:1.10.10.601.9E-20286330IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001666Biological Processresponse to hypoxia
GO:0009617Biological Processresponse to bacterium
GO:0009626Biological Processplant-type hypersensitive response
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0042761Biological Processvery long-chain fatty acid biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MGRPPCCEKA GVKKGPWTPE EDIILVSYIQ EHGPGNWRAV PTNTGLLRCS KSCRLRWTNY  60
LRPGIKRGNF TEHEEKMIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLNKKF  120
EGHDQEGKSS SSSSSQSKIS KGQWERRLQT DIHMAKQALC EALSLDTTPS TGDSPNNNSN  180
SSPNLPVQEP IQTSTTFASS ADNIAKLLQK WMKNSPQSSS QLSRSTSKMS SFNYPPIGAV  240
SSSSPSEGTI NNATTQEGLL RCSKSCRLRW TNYLRPGIKR GNFTEHEEKM IIHLQALLGN  300
RWAAIASYLP QRTDNDIKNY WNTHLKKKLN KKFEGHDQEG KSSSSSSSQS KISKGQWERR  360
LQTDIHMAKQ ALCEALSLDT TPSTGDSPNN NSNSSPNLPV QEPIQTSTTF ASSADNIAKL  420
LQKWMKNSPQ SSSQLSRSTS KMSSFNYPPI GAVSSSSPSE GTINNATTQE GLDSLFNFNS  480
SNNSDVSQSM SVDEGGNFTP ENNNAAIFQV ESKQNFKAEI NGSFHQEESK PNLETQVPFT  540
FLEKWLLDDN SNAQAQEELM GMALGETADL F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C6e-24143294105C-Myb DNA-Binding Domain
1msf_C6e-24143294105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00386DAPTransfer from AT3G28910Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009760429.11e-179PREDICTED: myb-related protein 306-like
SwissprotP813921e-115MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A1U7VDP01e-177A0A1U7VDP0_NICSY; myb-related protein 306-like
STRINGXP_009760429.11e-178(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28910.12e-98myb domain protein 30
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]