PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf08721g00001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB_related

Protein Properties

Length: 540aa MW: 60058.2 Da PI: 4.1865

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf08721g00001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.6	2.5e-07	286	332	3	46
SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqk 46 +W++eE+el+ ++v + W+ a +++ R++++++s++++ Niben101Scf08721g00001.1 286 KWSEEEEELFHEVVLSNPASvgknFWNHLAIEFP-SRSREELVSYYFN 332 8***********9988778888******.*********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.0E-4	281	344	IPR009057	Homeodomain-like
SMART	SM00717	0.0017	283	336	IPR001005	SANT/Myb domain
Pfam	PF00249	5.6E-6	286	332	IPR001005	SANT/Myb domain
CDD	cd00167	0.00605	286	332	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 540 aa Download sequence Send to blast
MVQKRPYGEE ELYEVSSKQP RHEPSCQLVS VLELSRESVA VKAYASVTGG VQHPVRLAKY 60 FFEVGAVFST PLITGGDEDN SSSINPDADN ELDSHNVAEA LLSSEKETDM GIYGSASNSS 120 WPTSCTSEED IRPEAPFHIF MSPEYYYFDH PFRGAAHHGE MYSSLLSDPP QKMVPIGPDF 180 QAELPEWGAF VNQDKPYMEG MHETLCPSSQ ADENKLAGTS IIPMSAMELC ADNVERGGEC 240 SCEDIGSIRC VRLHIMEARE KLKLALGEET FFRLGFCDMG EVVAEKWSEE EEELFHEVVL 300 SNPASVGKNF WNHLAIEFPS RSREELVSYY FNAFILRKRA EQNRFDPLNI DSDNDEWLQI 360 DAPREANMTD EDEESVVESP AYHNDLIGNG IHEELDKHDE DGGDATWEDY KALNFGSRKD 420 FTDVAEPCPG ELFDSNSSYK LSLQPQDQGL SNKVVKQEVQ DGPCTIVAAG VASESSLRQT 480 SNGKRWANDI TGMGSGTEHD RVLGPCGGKE WDVGYLSCAR NEVDLLPTRS MIEEVFGDGA

Sequence ? help Back to Top

Protein Sequence Length: 540 aa Download sequence Send to blast

MVQKRPYGEE ELYEVSSKQP RHEPSCQLVS VLELSRESVA VKAYASVTGG VQHPVRLAKY  60
FFEVGAVFST PLITGGDEDN SSSINPDADN ELDSHNVAEA LLSSEKETDM GIYGSASNSS  120
WPTSCTSEED IRPEAPFHIF MSPEYYYFDH PFRGAAHHGE MYSSLLSDPP QKMVPIGPDF  180
QAELPEWGAF VNQDKPYMEG MHETLCPSSQ ADENKLAGTS IIPMSAMELC ADNVERGGEC  240
SCEDIGSIRC VRLHIMEARE KLKLALGEET FFRLGFCDMG EVVAEKWSEE EEELFHEVVL  300
SNPASVGKNF WNHLAIEFPS RSREELVSYY FNAFILRKRA EQNRFDPLNI DSDNDEWLQI  360
DAPREANMTD EDEESVVESP AYHNDLIGNG IHEELDKHDE DGGDATWEDY KALNFGSRKD  420
FTDVAEPCPG ELFDSNSSYK LSLQPQDQGL SNKVVKQEVQ DGPCTIVAAG VASESSLRQT  480
SNGKRWANDI TGMGSGTEHD RVLGPCGGKE WDVGYLSCAR NEVDLLPTRS MIEEVFGDGA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009761171.1	0.0	PREDICTED: uncharacterized protein LOC104213369 isoform X1
TrEMBL	A0A1U7V892	0.0	A0A1U7V892_NICSY; uncharacterized protein LOC104213369 isoform X1
STRING	XP_009761171.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1514	16	25