PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Niben101Scf08597g01023.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 188aa MW: 21080.3 Da PI: 7.9622 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.9 | 5.9e-19 | 26 | 75 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr + +gr++AeIrdp + +r++lg+f+tae+Aa+a++ a+++++g Niben101Scf08597g01023.1 26 RYRGVRKQP-WGRFAAEIRDPI----KkTRVWLGTFDTAEDAARAYDDAARAFHG 75 8******99.**********72....35************************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.73E-18 | 25 | 82 | No hit | No description |
Pfam | PF00847 | 4.1E-12 | 26 | 75 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.077 | 26 | 83 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.1E-36 | 26 | 89 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.8E-31 | 26 | 83 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.08E-22 | 26 | 84 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 6.5E-11 | 27 | 38 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.5E-11 | 49 | 65 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 188 aa Download sequence Send to blast |
MPRWKNSETN RSTSVAFRHP KTDLKRYRGV RKQPWGRFAA EIRDPIKKTR VWLGTFDTAE 60 DAARAYDDAA RAFHGPKAKT NFSVFPPYGQ NQFENFNRPA SSSLSSTGES SSGARDFHSR 120 VELTRRITPS AVECYSGCDS SSTVVDDNID GDSSAFCKQP LPFDLNLLPP SDDVDDVHVT 180 PCIFSYFN |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-19 | 25 | 84 | 1 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 4e-19 | 25 | 82 | 4 | 62 | ATERF1 |
3gcc_A | 4e-19 | 25 | 82 | 4 | 62 | ATERF1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009767438.1 | 1e-105 | PREDICTED: ethylene-responsive transcription factor 3-like | ||||
Refseq | XP_009767439.1 | 1e-105 | PREDICTED: ethylene-responsive transcription factor 3-like | ||||
Refseq | XP_009767440.1 | 1e-105 | PREDICTED: ethylene-responsive transcription factor 3-like | ||||
Refseq | XP_016503257.1 | 1e-105 | PREDICTED: ethylene-responsive transcription factor 3-like | ||||
Refseq | XP_016503258.1 | 1e-105 | PREDICTED: ethylene-responsive transcription factor 3-like | ||||
Refseq | XP_016503259.1 | 1e-105 | PREDICTED: ethylene-responsive transcription factor 3-like | ||||
TrEMBL | A0A1U7VYH4 | 1e-104 | A0A1U7VYH4_NICSY; ethylene-responsive transcription factor 3-like | ||||
TrEMBL | R4WAQ5 | 1e-104 | R4WAQ5_TOBAC; Ethylene response factor #44 | ||||
STRING | XP_009767438.1 | 1e-104 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA14369 | 9 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G53170.1 | 6e-20 | ethylene response factor 8 |