PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf08587g00003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 330aa    MW: 36590 Da    PI: 7.0218
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf08587g00003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.33.2e-172168148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g+WT+eEd++l++ +k+ G g+W++ ++  g+ R++k+c++rw +yl
  Niben101Scf08587g00003.1 21 KGPWTPEEDDKLIQFIKKNGHGSWRSLPKLAGLLRCGKSCRLRWTNYL 68
                              79******************************99************97 PP
2Myb_DNA-binding40.37.6e-1374119148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               rg++  +E++l ++++  lG++ W++Ia+ ++ gRt++++k+ w+++l
  Niben101Scf08587g00003.1  74 RGPFGLDEQKLVIQLHGILGNR-WAAIASQLP-GRTDNEIKNLWNTHL 119
                               89999*****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.9E-241270IPR009057Homeodomain-like
PROSITE profilePS5129424.5171672IPR017930Myb domain
SuperFamilySSF466893.74E-2918115IPR009057Homeodomain-like
SMARTSM007172.9E-142070IPR001005SANT/Myb domain
PfamPF002493.1E-162168IPR001005SANT/Myb domain
CDDcd001672.09E-112368No hitNo description
Gene3DG3DSA:1.10.10.601.5E-2271123IPR009057Homeodomain-like
PROSITE profilePS5129416.29573123IPR017930Myb domain
SMARTSM007177.4E-1273121IPR001005SANT/Myb domain
PfamPF002497.1E-1274119IPR001005SANT/Myb domain
CDDcd001674.09E-880119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MCMREGGMGR TPCCDKNGLK KGPWTPEEDD KLIQFIKKNG HGSWRSLPKL AGLLRCGKSC  60
RLRWTNYLRP DIKRGPFGLD EQKLVIQLHG ILGNRWAAIA SQLPGRTDNE IKNLWNTHLK  120
RHLLSMGIDP DTHEPSSASN GLLRRPPTST SARHMAQWES ARLEAEARLS RESQLLVPSS  180
VERSDTDHFL RMWNSEIGET FRKFKNREKT DSQSPASQAS SCTKYGSASG ITTEVELGGV  240
DGSPVTGSNQ NESTEWKNGQ PHTEDILQGS ETSSCNALDD SSESALQLLL DFPSNNDLSF  300
LGHTDSCGMY PFLSESSLIC PKSEHAVCFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-28191235108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019237466.10.0PREDICTED: protein ODORANT1-like
SwissprotQ9M2D91e-121MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A1S3ZZJ80.0A0A1S3ZZJ8_TOBAC; protein ODORANT1-like
TrEMBLA0A1U7Y5J00.0A0A1U7Y5J0_NICSY; protein ODORANT1-like
STRINGXP_009794055.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-123myb domain protein 17