PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf08575g01003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 713aa    MW: 79401.3 Da    PI: 9.7282
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf08575g01003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP226.31.9e-081451546
                       AP2  5 GVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaa 46
                              GVr  k +gr+ + I dp    +r k+++lg+f+ta+eA  a+
  Niben101Scf08575g01003.1 14 GVRKQK-TGRYGSVITDP----IRhKQVWLGTFDTAQEASMAY 51
                              9**888.9*********7....357***************998 PP
2AP232.91.6e-10269314554
                       AP2   5 GVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                               GVr+ k +gr+ A I dp    +r k++++g+f+t eeA ka+   + ++e
  Niben101Scf08575g01003.1 269 GVRRQK-NGRYGAVITDP----IRhKKVWIGTFDTVEEASKAYFSKKCEFE 314
                               9**888.8*********7....357******************88887776 PP
3AP221.94.4e-07354397552
                       AP2   5 GVrwdkkrgrWvAeIrdpse.ngkrkrfslgkfgtaeeAakaaiaarkk 52 
                               G+r+ k +gr+ +     ++   ++k+++lg+f+t eeA k +   + +
  Niben101Scf08575g01003.1 354 GIRRQK-NGRYGVV---NTDlT-RHKKVWLGTFDTVEEASKVYFSKKSE 397
                               899777.8**9977...43332.46****************99766655 PP
4AP234.84.1e-11451498152
                       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkk 52 
                               +++ GVr +  +g + +eI  p    ++ kr++lg++gtaeeA +a+   +++
  Niben101Scf08575g01003.1 451 THFVGVRKRN-SGNYSSEITNP----ISkKRIWLGTYGTAEEASQAYQSKKLE 498
                               5799***888.7******9996....246*****************9766655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.6E-71173IPR001471AP2/ERF domain
PROSITE profilePS5103212.1281171IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-91358IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-111458IPR001471AP2/ERF domain
CDDcd000182.18E-121465No hitNo description
PROSITE profilePS5103212.721266325IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-10267312IPR016177DNA-binding domain
PfamPF008479.0E-6268315IPR001471AP2/ERF domain
SMARTSM003800.0012269326IPR001471AP2/ERF domain
CDDcd000187.12E-12269306No hitNo description
Gene3DG3DSA:3.30.730.102.0E-10269308IPR001471AP2/ERF domain
PROSITE profilePS510329.559347410IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-5353395IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.1E-6354391IPR001471AP2/ERF domain
CDDcd000186.08E-14451492No hitNo description
SMARTSM003803.2E-8452506IPR001471AP2/ERF domain
SuperFamilySSF541715.89E-11452500IPR016177DNA-binding domain
PfamPF008479.4E-6452495IPR001471AP2/ERF domain
PROSITE profilePS5103214.183452512IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.8E-15452499IPR001471AP2/ERF domain
PROSITE profilePS510328.768574636IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-4580620IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 713 aa     Download sequence    Send to blast
MVATDPKARR SLLGVRKQKT GRYGSVITDP IRHKQVWLGT FDTAQEASMA YSVKQCEFAR  60
LAKVNGKRSL SKVQRLKSGR CRSLLRDPIK KKDVFLGNFD TAEDASKVDF SKKSKVEKLV  120
MIKEGSISVT CEESELESSA VATSAGTGNQ SLNQTDGISN ERSTSFIKSP LLVVEWQNMG  180
KYCSVSKDPF NKKKILDTIE SVEESAKGFC SNMQEMEKLV NVKQGKGPVI HEKYSRETTC  240
SLNNVQGAKL SAGCDTVRDN PNARRSLIGV RRQKNGRYGA VITDPIRHKK VWIGTFDTVE  300
EASKAYFSKK CEFEKLNQGK QGNEPKSCEQ LQPESSDECN SVTSNPKAKG CLLGIRRQKN  360
GRYGVVNTDL TRHKKVWLGT FDTVEEASKV YFSKKSEFEK LIQGKQGNEP KNCERFEPGS  420
SSGALSPMAN DQSINTAGAS RNGGSNSPKT THFVGVRKRN SGNYSSEITN PISKKRIWLG  480
TYGTAEEASQ AYQSKKLEFQ KLLKEKQQCN KQISSAREKQ DGKRKLVNVK LGHETVNHEE  540
FQSESAGGAS SSGIDVPISN SSNEGSDQGI DFHKINSVEV QKRKSGKYTS EITNPISMEK  600
MSLGTVSATE EAFRADQSMK FDFQSSKNVE LQINPTDSSA GEKQAGQEDE DLWMGQWVQL  660
PGDRAVKFSL QLGLPIIDNY GSLLARPFED FLIQKIIIDT FRWQERDDQW KQQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019231369.10.0PREDICTED: uncharacterized protein LOC109212195 isoform X1
TrEMBLA0A1U7VXX50.0A0A1U7VXX5_NICSY; uncharacterized protein LOC104221795
STRINGXP_009771233.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43411240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.25e-13ERF family protein