PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf08546g05004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 274aa MW: 30925.7 Da PI: 8.0473 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.4 | 1.1e-20 | 126 | 176 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp + k +r++lg+f+ta eAaka+++a+ kl+g Niben101Scf08546g05004.1 126 HYRGVRQRP-WGKFAAEIRDP---NrKGTRVWLGTFDTAIEAAKAYDRAAFKLRG 176 8********.**********9...6566*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.12E-32 | 125 | 184 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.5E-32 | 125 | 185 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.17E-23 | 126 | 186 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.131 | 126 | 184 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.0E-15 | 126 | 176 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.6E-38 | 126 | 190 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-10 | 127 | 138 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-10 | 150 | 166 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 274 aa Download sequence Send to blast |
MASPQENCTT LDMVRNHLLD DVAFMDYYCS ETTTLYSQSS SSSESRDQSF SFEPTLNSAT 60 TAQSSNNLEV STFFNNSKTE FDSFEFGTKP NVSAPRSSSL KQTSFKERKH SLKIAIPVKQ 120 EDVQKHYRGV RQRPWGKFAA EIRDPNRKGT RVWLGTFDTA IEAAKAYDRA AFKLRGSKAI 180 VNFPLEVSNF KQEFNNEIQP CVNSSRKRVR EPVNEEQLVI NKEIKIEEER VPTVPLTPSS 240 WSAIWGSGDG KGIFEVPPLS PLSPNMAYSQ LVMI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-31 | 125 | 187 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional activator (By similarity). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by ethylene. {ECO:0000269|PubMed:10945353}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016491248.1 | 1e-160 | PREDICTED: ethylene-responsive transcription factor 5 | ||||
Swissprot | Q9LW48 | 1e-161 | ERF5_NICSY; Ethylene-responsive transcription factor 5 | ||||
TrEMBL | A0A060N6W8 | 0.0 | A0A060N6W8_9SOLA; Ethylene response factor | ||||
STRING | XP_009804351.1 | 1e-159 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA963 | 23 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51190.1 | 1e-58 | ERF family protein |