PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf08546g05002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 273aa    MW: 30830.5 Da    PI: 7.5694
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf08546g05002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.41.1e-20126176255
                       AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                               +y+GVr+++ +g+++AeIrdp   + k +r++lg+f+ta eAaka+++a+ kl+g
  Niben101Scf08546g05002.1 126 HYRGVRQRP-WGKFAAEIRDP---NrKGTRVWLGTFDTAIEAAKAYDRAAFKLRG 176
                               8********.**********9...6566*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.10E-32125184No hitNo description
Gene3DG3DSA:3.30.730.101.5E-32125185IPR001471AP2/ERF domain
PROSITE profilePS5103224.131126184IPR001471AP2/ERF domain
SuperFamilySSF541715.1E-23126186IPR016177DNA-binding domain
PfamPF008476.0E-15126176IPR001471AP2/ERF domain
SMARTSM003806.6E-38126190IPR001471AP2/ERF domain
PRINTSPR003671.2E-10127138IPR001471AP2/ERF domain
PRINTSPR003671.2E-10150166IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MASPQENCTT LDMVRNHLLD DVAFMDYYCS ETTTLYSQSS SSSESRDQSF SFEPTLNSAT  60
TAQSSNNLEV STFFNNSKTE FDSFEFGTKP NVSAPRSSSL KQTSFKERKH SLKIAIPVKQ  120
EDVQKHYRGV RQRPWGKFAA EIRDPNRKGT RVWLGTFDTA IEAAKAYDRA AFKLRGSKAI  180
VNFPLEVSNF KQQDNEIQSL GNSSRKRVRE TESEEQLVID KKMKMEEERV PTAPLTPSSW  240
SAIWDSGDGK GIFEVPLLSP LSPHMAYSQL VII
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-31125187163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A8e-31125189468ATERF1
3gcc_A8e-31125189468ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional activator (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00556DAPTransfer from AT5G51190Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by ethylene. {ECO:0000269|PubMed:10945353}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016491248.11e-154PREDICTED: ethylene-responsive transcription factor 5
SwissprotQ9LW481e-155ERF5_NICSY; Ethylene-responsive transcription factor 5
TrEMBLA0A060N6W81e-173A0A060N6W8_9SOLA; Ethylene response factor
STRINGXP_009804351.11e-153(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9632389
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.14e-62ERF family protein