PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf08546g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 233aa MW: 25694.3 Da PI: 8.6594 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.3 | 5.1e-20 | 98 | 148 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+++AeIrdp++ng +r++lg++ taeeAa a+++a+ +++g Niben101Scf08546g00001.1 98 HYRGIRQRP-WGKFAAEIRDPVKNG--ARVWLGTYETAEEAALAYDKAAYRMRG 148 7********.**********99997..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 4.2E-32 | 97 | 157 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-23 | 98 | 158 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 7.70E-31 | 98 | 157 | No hit | No description |
PROSITE profile | PS51032 | 24.105 | 98 | 156 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.5E-36 | 98 | 162 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.3E-14 | 98 | 148 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.9E-11 | 99 | 110 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.9E-11 | 122 | 138 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MYQPISTELP PTSFSSLMPC LTDTWGDLPL KLDDSDDMVI YGLLSDALTA GWTPFNLTST 60 EIKAEPRKEI EPATSPVPSV APPMETATTQ AVAPKGRHYR GIRQRPWGKF AAEIRDPVKN 120 GARVWLGTYE TAEEAALAYD KAAYRMRGSK ALLNFPHRIG LNEPEPVRLT IKRRSPEPAS 180 SSISSASENG LPKRRRKAVA AKQAELEVQS RSNVMQIGCQ MEQFPVGEQL LVS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-37 | 95 | 163 | 2 | 70 | ATERF1 |
3gcc_A | 5e-37 | 95 | 163 | 2 | 70 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by ethephon (ethylene-releasing compound) in buds and to a lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by both protein kinases and protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001311965.1 | 1e-161 | ethylene-responsive transcription factor 2 | ||||
Refseq | XP_009606945.1 | 1e-161 | PREDICTED: ethylene-responsive transcription factor 2 | ||||
Swissprot | Q40479 | 1e-162 | ERF2_TOBAC; Ethylene-responsive transcription factor 2 | ||||
TrEMBL | S0BDM5 | 1e-160 | S0BDM5_TOBAC; Ethylene response factor 32 | ||||
STRING | XP_009606945.1 | 1e-160 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4054 | 22 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17500.1 | 2e-49 | ethylene responsive element binding factor 1 |
Publications ? help Back to Top | |||
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