PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf08544g01008.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 485aa    MW: 54230.7 Da    PI: 5.8532
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf08544g01008.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.59.3e-13147169426
                               ---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                               + C ++++tGtCkyG +CkF+H+
  Niben101Scf08544g01008.1 147 ADCAYYMKTGTCKYGLNCKFNHP 169
                               68********************8 PP
2zf-CCCH27.55.3e-09196218527
                               --SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                               +C++++  G CkyG++Ck+ H++
  Niben101Scf08544g01008.1 196 ECKYYLTEGGCKYGNSCKYYHSR 218
                               7********************95 PP
3zf-CCCH40.83.6e-13239263226
                               -S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                               +++ C++++rtG CkyG++C+F+H+
  Niben101Scf08544g01008.1 239 GEKDCPYYMRTGSCKYGSNCRFHHP 263
                               7889********************9 PP
4zf-CCCH31.43.2e-10375401127
                               --S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                               ++++ C++f +tG Cky + CkF+H++
  Niben101Scf08544g01008.1 375 PGQPDCSYFIKTGDCKYRSDCKFHHPK 401
                               5789*********************96 PP
5zf-CCCH37.34.6e-12422447227
                               -S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                               +++ C+f++r+G+Ck+G+ CkF H++
  Niben101Scf08544g01008.1 422 DQAVCSFYSRYGICKFGPACKFDHPE 447
                               6789********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.145143171IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-5143170IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-6146172IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-10147169IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-5149168IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.183191219IPR000571Zinc finger, CCCH-type
SMARTSM003560.0022191218IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.01E-5196219IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-6196218IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-5197218IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-7237264IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.718237265IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.77E-7239265IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-10239263IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-6243262IPR000571Zinc finger, CCCH-type
SMARTSM003560.0011374401IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.563374402IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-5376401IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-5379403IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5418445IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.14420448IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-6420447IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-9422447IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MEAIESQQRI QNLNDSTLEK QDLGLDPQPL FSSDPGVQNP PQNLPDPVEN DDDDEIALQF  60
ICKELQGLVL NQAYIEERSQ GENHEDNGRE KSENEYGDNY YGGCDYTWSE NGNENENDVE  120
NENAGSKQWG FNGNRKGLDY PLRPDAADCA YYMKTGTCKY GLNCKFNHPS RRRNQQWAME  180
TGKQKDESEE RAGQIECKYY LTEGGCKYGN SCKYYHSRRK GAISPVQSIN FLGLPIRPGE  240
KDCPYYMRTG SCKYGSNCRF HHPDPSTVAG GDPSSRYNNG GSAPVKSAPC PAGSSWSSPR  300
ALNETASFVP VAYLASQGIP PLSPRWNGYL APVYPTSGKS LPTPPAFTIK DPATKTNFYT  360
RAHQPWVVEE YPDRPGQPDC SYFIKTGDCK YRSDCKFHHP KNQTSKTNMS VLDDKGLPLR  420
PDQAVCSFYS RYGICKFGPA CKFDHPEHYD NSASSIGSVF DQPPFGNSAT SYGSRWRGKE  480
MEVAL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009803257.10.0PREDICTED: zinc finger CCCH domain-containing protein 43-like isoform X1
RefseqXP_016462729.10.0PREDICTED: zinc finger CCCH domain-containing protein 43-like isoform X1
TrEMBLA0A1S3ZEF10.0A0A1S3ZEF1_TOBAC; zinc finger CCCH domain-containing protein 43-like isoform X1
TrEMBLA0A1U7YGM00.0A0A1U7YGM0_NICSY; zinc finger CCCH domain-containing protein 43-like isoform X1
STRINGXP_009803257.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44682343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-109C3H family protein