PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf08535g02005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRF
Protein Properties Length: 364aa    MW: 41479.8 Da    PI: 8.6499
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf08535g02005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.85.1e-2577120144
                       WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                               d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e
  Niben101Scf08535g02005.1  77 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVE 120
                               79***************************************986 PP
2QLQ59.69e-211044236
                       QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                              +FTa+Q+q+L++Q+l+yKy+++++PvPp+Ll  i+
  Niben101Scf08535g02005.1 10 PFTANQWQELEHQALIYKYMVSGMPVPPDLLYTIR 44
                              8*****************************97776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009515.2E-12945IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.2081045IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088804.6E-161043IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.94177121IPR014977WRC domain
PfamPF088793.4E-2178120IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MSSAARNRFP FTANQWQELE HQALIYKYMV SGMPVPPDLL YTIRRSLDSS LSSKLILHQP  60
HHIGWNCFQM GFGKKIDPEP GRCRRTDGKK WRCSKEAYPD SKYCERHMHR GRNRSRKPVE  120
IMTTTSTNTS TTTRPISNTT INTTTPTAIS ISSINKNTNN ISSSSSNSSH HSFSYLTSNH  180
EPHQYPFLYP HSSSSRPSPA AIGLESSTYS RNGYGDGLKE DVDEHIFFSE TSGTVRSTCG  240
SNSVDDTWQL SPLTMASPMK QRTYSLSQNT GHSASSYLQL QSLNESSKDH HYQYYNDAKS  300
MKFETEDQQQ QPKKVMHHFF DEWPKDNKDS WLDSEDKFSG LSKTQLSISI PNPSHDFFIT  360
TNEK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009767378.10.0PREDICTED: growth-regulating factor 1-like
RefseqXP_016449440.10.0PREDICTED: growth-regulating factor 1-like isoform X2
TrEMBLA0A1S3YB510.0A0A1S3YB51_TOBAC; growth-regulating factor 1-like isoform X2
TrEMBLA0A1U7VLY80.0A0A1U7VLY8_NICSY; growth-regulating factor 1-like
STRINGXP_009767378.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7432384
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.15e-54growth-regulating factor 5