PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf08533g03005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 273aa    MW: 31822.4 Da    PI: 10.6112
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf08533g03005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.68e-10205246346
                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                               +WT eE e ++d  + +G++ +++Ia+ +  ++t  +c+++++k
  Niben101Scf08533g03005.1 205 PWTSEERENFIDKLAIFGKD-FRKIASFLD-HKTTADCIEFYYK 246
                               8*****************99.*********.***********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.22E-15188250IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.0E-6196247IPR009057Homeodomain-like
PROSITE profilePS5129316.422201252IPR017884SANT domain
SMARTSM007175.4E-9202250IPR001005SANT/Myb domain
PfamPF002492.9E-7204246IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MYSRTXGSLN CGKDALYNLI LAANKDTAHR AFDVFKNLLP AGKCSFDFSS VSSLQIDHAV  60
KERFARRKQF KQFKEKIIAL KFRVHQHLWK EDMRLLSARM FRAKSQKKFD FSLRPVQIGH  120
QKHRSTVRSR FSSTVGNSSL VPSSEVLNFA SRLLSDLRAK VYRNTLRMPA LILDQKDRTM  180
SRFISKNSLV EDPCAVEKER SVINPWTSEE RENFIDKLAI FGKDFRKIAS FLDHKTTADC  240
IEFYYKNHKS DCFERTKRKP DYSKQAKVCS AFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4a69_C8e-15168253993NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D8e-15168253993NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019245846.11e-177PREDICTED: uncharacterized protein LOC109225585
TrEMBLA0A1J6IEN81e-175A0A1J6IEN8_NICAT; Uncharacterized protein
STRINGXP_009803598.11e-175(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59042332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52250.15e-63MYB family protein