PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf08519g03001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 709aa    MW: 79345.1 Da    PI: 6.4563
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf08519g03001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.48e-06125145425
                               ---SGGGGTS--TTTTT-SS-S CS
                   zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                               ++C ff++ G+C  GdrC+F H
  Niben101Scf08519g03001.1 125 VPCIFFQQ-GFCLKGDRCPFFH 145
                               79******.***********88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.1223160IPR000571Zinc finger, CCCH-type
PfamPF156635.6E-113286No hitNo description
SMARTSM003560.00233259IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.4556288IPR000571Zinc finger, CCCH-type
SMARTSM003560.736487IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.573121148IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-4122147IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-5124146IPR000571Zinc finger, CCCH-type
PfamPF146080.089126145No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 709 aa     Download sequence    Send to blast
MVGPMPPQQL QIQTPSTEAA PATLSAEDES LKRNTDCVYF LASPLTCKKG SECEYRHSDV  60
ARLNPRDCWY WLNGSCLNPK CGFRHPPLDG FLGAQVQTPK GSSVPPVASV APTPNVPYGS  120
GKQGVPCIFF QQGFCLKGDR CPFFHAPISV SNKAPPHPVS TASTEKTPIK KAFGGLEKWV  180
QGKTFSQANT WKSGELPVQA QPVGKLGTHL SKKDAAFNEN VLPPNSVIDV LHHRHKPKSV  240
PPTNGNPVGR SNRVQQSVKD DDISRELSPG FDVLVDDELR GNDFYHGEDQ YGRHEGRNKY  300
DIGHCHSADY TSVADIDQDA YHDVYGRDSH DRVPVRSDRV QHRPSKERIQ GESAHPERRR  360
YGRAYSPEEV RESDLRHRLS KHKRVNGLRS VISHDYASEK HVDDRGYQSY RRDRHHLPSH  420
DSSVASRLRG RIKLPSRSSS PTNGTDMRLD RDMDRARDRG RLSLERPQLL SQQGRLRDRI  480
KGRVQEDLNN AGRNNSGPRL RRDISENDSD FSGPRSLAEL KGRKTAETSE QNVNEQQALG  540
KRKFQKRDVD QQSGGDLSFE GPMPLQEILK RKRSEAGMTS GKSEDYQHER KDHSLVTSSI  600
SRSGPNLGQK EESDPPSGEK NGPQETISAG HQSPLHDGAN ELEAEEGMIV EEDDQDLEGH  660
DQRDYDYEQV DGEDYNLDEG ENADAGEEYL DEDDDDGDDF AKKMGVVFS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019235921.10.0PREDICTED: zinc finger CCCH domain-containing protein 17-like
TrEMBLA0A1J6K3B90.0A0A1J6K3B9_NICAT; Zinc finger ccch domain-containing protein 17
STRINGXP_009759890.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40241633