PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf08516g01005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 251aa    MW: 27937.5 Da    PI: 10.2041
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf08516g01005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.4e-19119167355
                       AP2   3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               y+GVr ++ +grW AeIrd       r r++lg+f+t+eeAa+a++aa++ l+g
  Niben101Scf08516g01005.1 119 YRGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTPEEAARAYDAAARWLRG 167
                               9*******.**********32....25**********************97776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.062118175IPR001471AP2/ERF domain
SMARTSM003804.8E-32118181IPR001471AP2/ERF domain
PfamPF008472.2E-13118167IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.4E-29118175IPR001471AP2/ERF domain
CDDcd000181.23E-20119176No hitNo description
PRINTSPR003672.7E-10119130IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-21119176IPR016177DNA-binding domain
PRINTSPR003672.7E-10141157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MLPKTDPFIL SKKQSLYPNE PIDHLCIDST NYLDPVHSFS EFSTPKHDQK SPVLEGIAAV  60
VGEHVLFGSC NNQNKRIVDE NSESTTAVSI LKRSCHAPDK YRGGGGKEEK RNVPVERSYR  120
GVRKRPWGRW SAEIRDRIGR CRHWLGTFDT PEEAARAYDA AARWLRGSKA RTNFQIPPVV  180
PLPLHSPPTS TSSSSNTSAE EKKNKKNIPC AKRNTPNNNR KCSVVTSAAH LFSSSSPSTV  240
ELDLKLGFGK K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-16111174671Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016492374.11e-157PREDICTED: ethylene-responsive transcription factor ERF084-like
SwissprotQ9M8M53e-27ERF84_ARATH; Ethylene-responsive transcription factor ERF084
TrEMBLA0A1S4BU161e-155A0A1S4BU16_TOBAC; ethylene-responsive transcription factor ERF084-like
STRINGXP_009798051.11e-155(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA115522225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.16e-25ERF family protein