PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf08470g06001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 356aa    MW: 40392.9 Da    PI: 4.8729
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf08470g06001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.85.1e-10159205354
                               HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                       HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                               ++h   Er+RR ++N+++   r+++P++      K++ a+i+   +eYI++L
  Niben101Scf08470g06001.1 159 TKHFTTERQRRVHLNDKYKASRSIIPNS-----SKNDRASIVNDSIEYINEL 205
                               78*************************8.....6***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.96E-12152220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.129156205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-7159205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.6E-11159210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.67E-9159210No hitNo description
SMARTSM003531.8E-6162211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MQELVHEQIN QGISCDQSNW GEMSFPPYQN QEDNNNFQHV AHDIQNGHQQ QNFPNSLPEA  60
PYNLPNPDLL NMFPLHRSSI SSANTNTNQA SNLLTSLGLL GDINIPATAD GAPNSIAERD  120
QLSGALYQDG EEKPFENGIF EFSADMNDIA KNRDIGKDTK HFTTERQRRV HLNDKYKASR  180
SIIPNSSKND RASIVNDSIE YINELKRELH DLEIMVEKKR CNRDRIKRQK KEEDGNSIDG  240
NDSKQMDERR SKNTQVDVLV VDNDFFFLFL FAPDDEVTIK LVQKKRINCL LFASKVLDDL  300
QLDLQHVAGG LIGDYYSFLF NSKICEGSTM YASAIAKKLT EVVDVQYAAI APTNNY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009788149.10.0PREDICTED: transcription factor bHLH91-like
RefseqXP_016475217.10.0PREDICTED: transcription factor bHLH91-like
TrEMBLA0A1S4AEW60.0A0A1S4AEW6_TOBAC; transcription factor bHLH91-like
TrEMBLA0A1U7XMH40.0A0A1U7XMH4_NICSY; transcription factor bHLH91-like
STRINGXP_009788149.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26962351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.12e-52bHLH family protein