PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf08470g05002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HSF
Protein Properties Length: 364aa    MW: 42316.6 Da    PI: 5.021
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf08470g05002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind97.41.5e-30321492103
                               HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT............ CS
              HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks............ 74 
                               Fl+k+y++++d+++++++sws+ +nsf+v+d++++a ++Lp+yFkh+nf+SFvRQLn+Y      +  + s+             
  Niben101Scf08470g05002.1  32 FLNKTYQLVDDPSTNDVVSWSRGKNSFIVWDPQTLAMNLLPRYFKHNNFSSFVRQLNTYPTILAASIIGFSSPyiffpywrsrng 116
                               9**********************************************************98888777776555899999988887 PP

                               ....XTTSEEEEESXXXXXXXXXXXXXXXXXXX CS
              HSF_DNA-bind  75 ....kekiweFkhksFkkgkkellekikrkkse 103
                                   +++ weF+++ F +g+k+ll+ki+r+k++
  Niben101Scf08470g05002.1 117 frkvNPDHWEFANEGFLRGQKHLLKKIRRRKTS 149
                               776559************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467859.52E-3127146IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.7E-4628146IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.109.3E-3528146IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.2E-2832146IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-143255IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-147082IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-148395IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MDHFGSIKEE FTFMSNMPQP MEGLHESGPP PFLNKTYQLV DDPSTNDVVS WSRGKNSFIV  60
WDPQTLAMNL LPRYFKHNNF SSFVRQLNTY PTILAASIIG FSSPYIFFPY WRSRNGFRKV  120
NPDHWEFANE GFLRGQKHLL KKIRRRKTSN NSLHSAGNCN KASNQGMEYS SCVELGRFGL  180
DGEIDRLRRD KQVLMMELVN LRQQQQANIS YLKSMEEKLK GTEMKQQQMM SFLAKAIQNP  240
NFVHQIMQQK DKRKQLEEEI NKKRRRPIDQ GPSNIENLSI KQESDRDYGD VYGFDDLELE  300
EDNYVDQKAD IESGDKVINE GFWEDLFIEN IGEDEMALLG IEEEDEEDMN VLSEHLGLLG  360
STLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-202714912123Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1251265KRKQLEEEINKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016498663.10.0PREDICTED: heat stress transcription factor A-6b-like
SwissprotQ9LUH81e-114HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A1S4CBZ20.0A0A1S4CBZ2_TOBAC; heat stress transcription factor A-6b-like
STRINGXP_009798078.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57224113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-117heat shock transcription factor A6B