PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf08445g02019.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C3H | ||||||||
Protein Properties | Length: 706aa MW: 78584.4 Da PI: 5.4051 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.9 | 1.5e-07 | 120 | 141 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C ff+r G+C+ Gd+C F+H Niben101Scf08445g02019.1 120 VPCVFFQR-GICSKGDNCAFMHA 141 69******.*************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 10.793 | 26 | 55 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF15663 | 2.1E-11 | 27 | 81 | No hit | No description |
SMART | SM00356 | 0.0023 | 27 | 54 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.235 | 57 | 83 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.12 | 59 | 82 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.624 | 116 | 143 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-6 | 117 | 141 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.1E-6 | 117 | 142 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.2E-4 | 121 | 141 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.1E-5 | 121 | 141 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 706 aa Download sequence Send to blast |
MVGPTPPLPQ LQTQPPAPSS TEDEALKRNT DCVYFLASPL TCKKGSECEY RHSDMARLNP 60 RDCWYWLNGN CLNPKCAFRH PPLDGFVEAQ APTIIGSSVG PVVSVAPMPQ VPYASSKQNV 120 PCVFFQRGIC SKGDNCAFMH APNSISSKPL QPPVSTASGE TPTAKNAFGG VQNAVQGKKL 180 SQTNHPKPSV LPKPVWKLEN HLTNKEKTFD EKALPPNSVI NRESTRYKPS MPATNGNSLS 240 GPNRVQEPIG LDEHSSMQNK DDEISRDPSP GFDVLVDDEL RGSDYYHDED QYGGTRSNGG 300 RNEYDMGDSA DYDSVADIDR DIYHDGHGYD SYDRLQSRYA WEQPIASSER IPGGSAHLER 360 RRYGTVDRPE QVKMSDLRHR LSKHRRGNGL KSVIGHDFSS EKNVDDRANK SSRRDIHYVP 420 SHDSSLSGRL RGRIKLPVRS SSPTERAELR LNREMDRARY RGRLSSERPQ LSSYQGRLQD 480 RIKGRVQEDL SNGDRNNRGP RLRRDIINDN NSNFVRPKSL VELKGRKTAE SNEQQHLGKR 540 KFQKLDSGED QSFEGPMSLQ EILKRKRGGG AGMTSGGSED YEHERKGQTV MTIGNVADFP 600 SAIIKNGSGL PIQQEEESKL AADHQSPLCR SANELEAEEE MIMEGSDAQG QDEGYNQVDG 660 DDDYEPVEGE VYALEEGENG DLDDEYLDDD DDDGDDFAKK LGVVSS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019254451.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 17 | ||||
TrEMBL | A0A1J6IR72 | 0.0 | A0A1J6IR72_NICAT; Zinc finger ccch domain-containing protein 17 | ||||
STRING | XP_009791854.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4024 | 16 | 33 |