PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf08333g00001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 303aa    MW: 34425.6 Da    PI: 6.9215
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf08333g00001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.72.4e-14125177155
                               CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                               ++ +hn+ Er RR+++Ns ++ Lr+llP  +   ++kKls  ++  ++ +YI +Lq
  Niben101Scf08333g00001.1 125 KKLNHNASERDRRKKVNSLYSSLRSLLPAsD---HKKKLSIPSTISRVLKYIPELQ 177
                               6789*************************55...8888***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.202124176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-15125193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.06E-5125181No hitNo description
Gene3DG3DSA:4.10.280.101.2E-12125193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-11125177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-10130182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MNKGSFAEAV SDLENEGLLL LNSSSFETFE DRVFHTLHFQ IQGTMVVELD SYETSYRRIL  60
RRKTSHNEFL DPISHHFINT AADNSVAVLH SSSSSSSQTR FIGHCNAKKF DQISNNGDQP  120
DQMVKKLNHN ASERDRRKKV NSLYSSLRSL LPASDHKKKL SIPSTISRVL KYIPELQNEV  180
ERLTEKKAEL TSRTICNKEN STDFNKQKRR RGNESSSLVI SATEIGDKEV VIQISSLKMN  240
KGSFAEAVSD LEDEGLLLLN SSSFETFEDR VFHTLHFQVQ GTIVVELGML RDKLSSYFEK  300
EDI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009625856.11e-129PREDICTED: transcription factor ORG2-like isoform X3
RefseqXP_016475053.11e-129PREDICTED: transcription factor ORG2-like
TrEMBLA0A1S4AF171e-127A0A1S4AF17_TOBAC; transcription factor ORG2-like
STRINGXP_009625856.11e-128(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22262256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.12e-45bHLH family protein