PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf08298g03010.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 552aa    MW: 59625.7 Da    PI: 6.4561
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf08298g03010.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH505.5e-16352398455
                               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                hn  Er+RRdriN+++  L+el+P +      K +Ka++L +A+eY+ksLq
  Niben101Scf08298g03010.1 352 VHNLSERKRRDRINEKMRALQELIPRC-----NKTDKASMLDEAIEYLKSLQ 398
                               6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.08E-17346402No hitNo description
PROSITE profilePS5088818.463348397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.24E-21349425IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-13352398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-20352406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.7E-18354403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MNHSVPDFDM DDDYTIPTSS GLTRPKKSAM AEEDIMELLW HNGQVVMQSQ NQRSLKKPHI  60
SNGGGGGGSG DALIPSEQAV SREIRHVEEN TTSQQLFMQE DEMASWLHYP LDDSSSFERD  120
LYADLLYSTP SATVTTAAPP REIRTPTVEI RPAPPQPSPA APIAVAPRPP IPPPARRPGT  180
ESSHRFQNFG HFSRLPSRTR SELGPSNSSK SPRESTVVDS NETPISGPES RVSHVADNVV  240
PVPGGNVACG AVNVNGTATA STAIREPATT CELSVTSSPG SGNSINASAE PPPSKTAALT  300
TPTAAASNDR KRKGIETDDG DGQNEDAEFE SGDTKKHARG STSTKRSRAT EVHNLSERKR  360
RDRINEKMRA LQELIPRCNK TDKASMLDEA IEYLKSLQLQ VQMMSMGCGM VPIMHPGMQQ  420
YMPAMGMGMV GMGMEIGMNR PMVSYPPLLP GAAMQNAAAA AQMGPRFPMA PFHLPPVPVP  480
DPSRMQASSQ QDPMLNPLVA RNPNQPRLPN FNDPYQQYFG LHQAQNQAVE QQGYNKPGSS  540
REVGNPGNPQ SG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1356361ERKRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019251630.10.0PREDICTED: transcription factor PIF1-like
TrEMBLA0A1J6JNV30.0A0A1J6JNV3_NICAT; Transcription factor pif1
STRINGXP_009794497.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40592341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.38e-66phytochrome interacting factor 3-like 5