PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf08278g00007.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 366aa    MW: 41728.6 Da    PI: 4.5625
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf08278g00007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.11.2e-19133183155
                       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                               ++++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ kl+g
  Niben101Scf08278g00007.1 133 KKFRGVRQRP-WGKWAAEIRDPA----RrVRLWLGTYDTAEEAAMVYDNAAIKLRG 183
                               59********.**********82....35*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.74E-33133190No hitNo description
PROSITE profilePS5103223.657134191IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-21134190IPR016177DNA-binding domain
PfamPF008479.0E-13134183IPR001471AP2/ERF domain
SMARTSM003801.5E-38134197IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-29134190IPR001471AP2/ERF domain
PRINTSPR003674.1E-10135146IPR001471AP2/ERF domain
PRINTSPR003674.1E-10157173IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MDHYMLCPIK YTEHRNVIRK VTKPSRVKSK KFPEPQKSNQ YNRFVPPKTV WISVTDPDAT  60
DSSSDEEDEL FGRRRVKKYI NEISIETAVK CEVSMPTNGK TAVKKRAADV LQPKQKPMKV  120
KEVQPLQSAG TVKKFRGVRQ RPWGKWAAEI RDPARRVRLW LGTYDTAEEA AMVYDNAAIK  180
LRGPDALTNF ITPPRPEIDV PSNSGYESGN ESRNIPSPTS VLRFIMSQSS EETEQQSRSE  240
PVQEECPSVQ GPMECEQPVQ DFEPVQNVEL FGLPVKQEME ECQGETSMIP DYSNAYLPID  300
VPFLEDFFNF EAAEQTLFED TTTGFPNDFG TSYNATSSSD FMNDFLFNDD FYNFYDSFQD  360
LGTSSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-21133190159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A4e-21133190462ATERF1
3gcc_A4e-21133190462ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019264232.10.0PREDICTED: ethylene-responsive transcription factor CRF4-like
TrEMBLA0A314L4X80.0A0A314L4X8_NICAT; Ethylene-responsive transcription factor crf4
STRINGXP_009596437.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.15e-53cytokinin response factor 4