PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Niben101Scf08259g02004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | E2F/DP | ||||||||
Protein Properties | Length: 226aa MW: 24463.7 Da PI: 9.6295 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 41.6 | 2e-13 | 101 | 137 | 24 | 65 |
E2F_TDP 24 ivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekn 65 + ln+ a+ L +v +RRiYDi+NVLe+++liek+ k+ Niben101Scf08259g02004.1 101 WIPLNHSADVL---KV--AKRRIYDITNVLEGIGLIEKTTKS 137 57789999999...88..********************9997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01372 | 8.7E-5 | 53 | 143 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 6.26E-9 | 99 | 137 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 9.3E-13 | 100 | 137 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF02319 | 1.7E-11 | 102 | 137 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 226 aa Download sequence Send to blast |
MSTAGENVDL NLNLNLSLAP LHLMSQICSE SRPVARNLFA SSTFVSAPRT VAANHSPLGQ 60 AARARAKKSS KGKASRDAIS AATGINADLL DNLNLGGSYR WIPLNHSADV LKVAKRRIYD 120 ITNVLEGIGL IEKTTKSWFP STRSRGLHDQ VSTLKEPPSD GGRYHELASF QGWKHEDVTI 180 KHTKQLDALT ADEKMDDAYL SSVPPCSLDS TTSKLSGVHK IVPSYA |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 110 | 116 | LKVAKRR |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009783024.1 | 2e-79 | PREDICTED: transcription factor E2FC-like | ||||
TrEMBL | A0A1U7X7Y4 | 5e-78 | A0A1U7X7Y4_NICSY; transcription factor E2FC-like | ||||
STRING | XP_009783024.1 | 9e-79 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12625 | 20 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G47870.1 | 1e-12 | E2F/DP family protein |