PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf08249g02004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 170aa MW: 19001.2 Da PI: 10.3992 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.1 | 7.9e-17 | 83 | 132 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+++AeIrdp + k r++lg+f+ +Aa+a++ a+ k++g Niben101Scf08249g02004.1 83 YRGVRRRP-WGKFAAEIRDP---NrKGSRIWLGTFDADVDAARAYDCAAFKMRG 132 9*******.**********9...6566**********99*************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 24.105 | 82 | 140 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.04E-28 | 82 | 140 | No hit | No description |
Pfam | PF00847 | 4.4E-12 | 82 | 132 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.7E-36 | 82 | 146 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.7E-31 | 82 | 141 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.29E-22 | 82 | 142 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.9E-13 | 83 | 94 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-13 | 122 | 142 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MENVLFTCSR MEVRNRSNGH GNQALGVEGL IKIDNVSIDD FPEFKTNSDT NLSPTSDSRV 60 SSNSTISSDT TSSNNNENKE RNYRGVRRRP WGKFAAEIRD PNRKGSRIWL GTFDADVDAA 120 RAYDCAAFKM RGRKAILNFP MDAGKSGAPA NIGRKRRRDN GIQLEMLINL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-26 | 79 | 141 | 2 | 64 | ATERF1 |
3gcc_A | 1e-26 | 79 | 141 | 2 | 64 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 153 | 157 | RKRRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019257925.1 | 3e-87 | PREDICTED: ethylene-responsive transcription factor ERF106-like | ||||
Swissprot | Q9LY05 | 1e-44 | EF106_ARATH; Ethylene-responsive transcription factor ERF106 | ||||
TrEMBL | A0A1J6HU70 | 6e-86 | A0A1J6HU70_NICAT; Ethylene-responsive transcription factor erf106 | ||||
STRING | XP_009597659.1 | 2e-76 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07580.1 | 8e-46 | ERF family protein |
Publications ? help Back to Top | |||
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