PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf08242g01021.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 792aa    MW: 88028.3 Da    PI: 8.7064
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf08242g01021.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix57.63.2e-1836129186
                  trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergf..erspkqCkekwenlnkrykkikegekk....rtsesss 77 
                               +W+++e+ aLi+a+r+++ +l+rg+l++++W+ev++ +  r  g+   ++++qC++k+e+l+kry+ + +++      r+ +  s
  Niben101Scf08242g01021.1  36 CWSHDETIALIDAYRDKWYSLSRGNLRANHWQEVADDVaaRCPGVdpPKTAVQCRHKMEKLRKRYRTEIQRAAPyggvRSHRYCS 120
                               7************************************976555665589*****************9988876411113445556 PP

                  trihelix  78 tcpyfdqle 86 
                                +++f++++
  Niben101Scf08242g01021.1 121 AWVLFKRMD 129
                               677777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.9E-2035131No hitNo description
PROSITE profilePS500906.1443797IPR017877Myb-like domain
SMARTSM005955.1E-1044136IPR006578MADF domain
SuperFamilySSF484033.45E-33305566IPR020683Ankyrin repeat-containing domain
SMARTSM002481800313342IPR002110Ankyrin repeat
PROSITE profilePS5029729.096313504IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.7E-12314392IPR020683Ankyrin repeat-containing domain
PfamPF127964.2E-12319408IPR020683Ankyrin repeat-containing domain
SMARTSM002480.13348377IPR002110Ankyrin repeat
CDDcd002046.01E-26350471No hitNo description
SMARTSM002486.6E-5382411IPR002110Ankyrin repeat
PROSITE profilePS5008810.873382414IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.205.0E-17393462IPR020683Ankyrin repeat-containing domain
PfamPF127962.0E-8413480IPR020683Ankyrin repeat-containing domain
SMARTSM002489.6416446IPR002110Ankyrin repeat
SMARTSM002480.017450479IPR002110Ankyrin repeat
PROSITE profilePS500889.164450482IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.202.6E-7463570IPR020683Ankyrin repeat-containing domain
SMARTSM002481700489526IPR002110Ankyrin repeat
PfamPF139625.5E-14631727IPR026961PGG domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 792 aa     Download sequence    Send to blast
MATLSSSTQD FSNSQSELPS AKVTVAVSSR RLPPPCWSHD ETIALIDAYR DKWYSLSRGN  60
LRANHWQEVA DDVAARCPGV DPPKTAVQCR HKMEKLRKRY RTEIQRAAPY GGVRSHRYCS  120
AWVLFKRMDA MERGPNAVSS DEEADEGVVN YRQNSVKLIG DLYGNNNVNT NNNRSSSFQG  180
VASLGGGGFR IRIPGMPVAA PPMAKPYSRM EDSGVENPNY FGPGKMFRGD SFVKKADMGR  240
RVAGEGVGPV REKKKEDPMG EMVAAIKMLG DGFVRMERMK MDMARELEEM RMEMEMKRTQ  300
MILESQQRIV EAFGQARLWE AAQKGDIHHL QSLIKEDPLL LRAVSLAGNE TPLHIACLGG  360
HLEFAKAIVH LRPEFAREVN QDGFSPLHIA SANGDIEIVK QLLNIDCNLC LVKGKDRKIP  420
LHYAVIKGRK HVMREFLVAF PDSVAEVTAR GETCLHLAVK NHQFDAFKLL LENLKEFNKF  480
DLLSKKDILG NTVLHLAVST KQYEASVSHV SLCLFFLFIL VVDLLLDENV VPKGIIEVNS  540
LNKGGLTPLD VLLKECGDGD IEEILRASGA VSVENLQSSQ QEASPQSWVV SLQDSSNEQS  600
SRERRREQPR SRSKKLQDYF KYNKTKDSPG KARDTLLVIA ILIATATYQA VLSPPGGVWQ  660
DSYRPGGNNN TSSDDKMSAP HVAGQSVMGT INPISYGLVL VFNSIGFYVS LHTINFLTIG  720
FPLQLELQVS LVALTATYGI VMSAITPNPG IAIFFIIFSS VFPVLLPYIS MLLRNYCKKP  780
IFLSRLMNCS VS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n0r_A3e-1435147241224 ankyrin repeats
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009759429.10.0PREDICTED: ankyrin repeat-containing protein At3g12360-like
RefseqXP_016449283.10.0PREDICTED: ankyrin repeat-containing protein At3g12360-like
TrEMBLA0A1S3YB940.0A0A1S3YB94_TOBAC; ankyrin repeat-containing protein At3g12360-like
TrEMBLA0A1U7VAV90.0A0A1U7VAV9_NICSY; ankyrin repeat-containing protein At3g12360-like
STRINGXP_009759429.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.11e-55Trihelix family protein