PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf08196g00012.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 250aa    MW: 28089.4 Da    PI: 4.6192
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf08196g00012.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.41.2e-2099149155
                       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                               ++y+GVr+++ +grW+AeIrdp+    r kr++lg+++t+eeAa  +++a+  l+g
  Niben101Scf08196g00012.1  99 KKYRGVRQRP-WGRWAAEIRDPT----RgKRVWLGTYDTPEEAATVYDRAAVMLKG 149
                               59********.**********84....35*********************988876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381231.7E-773250IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000187.64E-3499157No hitNo description
Gene3DG3DSA:3.30.730.106.1E-31100158IPR001471AP2/ERF domain
SuperFamilySSF541714.12E-23100158IPR016177DNA-binding domain
PROSITE profilePS5103224.316100157IPR001471AP2/ERF domain
PfamPF008476.6E-14100149IPR001471AP2/ERF domain
SMARTSM003802.8E-39100163IPR001471AP2/ERF domain
PRINTSPR003672.4E-10101112IPR001471AP2/ERF domain
PRINTSPR003672.4E-10123139IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MILQPPVKFS EHLVTTNKEV HELNMKNPQK VVRIIFTDGD ATGSSDDEDD QFMVRRVKRY  60
VTQINFTLLP ESPKQDAQPQ QSSRKRCLPS SDSDVSCRKK YRGVRQRPWG RWAAEIRDPT  120
RGKRVWLGTY DTPEEAATVY DRAAVMLKGP DAVTNFPLVS PASETTESES IMVSPAKTEV  180
SSKDVALSPT SVLRSDDFGP FDGSLGFSEV DAFGFEIDSP FGLTGFGMSE KYFAEEFSEF  240
DFDDFALEVR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-2299158161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A8e-2299158464ATERF1
3gcc_A8e-2299158464ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates the defense genes of plants. {ECO:0000269|PubMed:11971137}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009767000.11e-178PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like
RefseqXP_016487564.11e-178PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like
SwissprotO046824e-83PTI6_SOLLC; Pathogenesis-related genes transcriptional activator PTI6
TrEMBLA0A1S4BF981e-177A0A1S4BF98_TOBAC; pathogenesis-related genes transcriptional activator PTI6-like
TrEMBLA0A1U7VYC21e-177A0A1U7VYC2_NICSY; pathogenesis-related genes transcriptional activator PTI6-like
STRINGXP_009767000.11e-177(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52272137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.12e-38cytokinin response factor 4