PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf08137g02017.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 451aa    MW: 49187.9 Da    PI: 5.5643
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf08137g02017.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.57.2e-143784147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqky 47
                              r +WT+eE++++v+a k++G   W+ I  + g   ++t+ q++s+ qk+
  Niben101Scf08137g02017.1 37 REKWTEEEHQRFVEALKLYGRA-WRQIEGECGhvGTKTAIQIRSHAQKF 84
                              789*****************88.******999999************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.4373289IPR017930Myb domain
SuperFamilySSF466891.27E-143288IPR009057Homeodomain-like
TIGRFAMsTIGR015575.5E-153587IPR006447Myb domain, plants
SMARTSM007178.8E-93687IPR001005SANT/Myb domain
PfamPF002493.2E-103783IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.2E-73780IPR009057Homeodomain-like
CDDcd001671.86E-73985No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MISSKLETVT TQGKASACLA NEITLKVRKP YAITKQREKW TEEEHQRFVE ALKLYGRAWR  60
QIEGECGHVG TKTAIQIRSH AQKFFAKVAR DSGTDGDESL NAIDIPPPRP KKKPLHPYPR  120
KMADSPVTNK SVSGQPERSS PPNALGRDSC SPDSVLSEIC SDVSEYPVAE QQSSRFSPRS  180
CTTDVHTANI ISGQDNDESM TSKSNVVKEI PAASKPVAAS SSSIFSSGME CDFVPRETSC  240
PGEKLAVEAP LASIKLFGQM VLVPDATKLA LQSPAGSCNS LPSKTTENEI ETNNGNVIHG  300
FQANSQFILP VVPGNMIPSA FWFKQDMLEN NPEGVAAFPT TIPWLSWYQD LVYISSCSQT  360
AADTTTLCRQ PEDEEPQREG SSSGSSVGSA SDVDDGNRSS ETVESKYTTK SDKWNNSKGF  420
VPYKRCLAQR DGMTSGVELE ERESQRVRVC S
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009768903.10.0PREDICTED: uncharacterized protein LOC104219851 isoform X1
RefseqXP_009768904.10.0PREDICTED: protein REVEILLE 1-like isoform X2
RefseqXP_009768905.10.0PREDICTED: protein REVEILLE 1-like isoform X2
RefseqXP_016493565.10.0PREDICTED: uncharacterized protein LOC107812899 isoform X1
RefseqXP_016493566.10.0PREDICTED: protein REVEILLE 1-like isoform X2
TrEMBLA0A1S4BXD50.0A0A1S4BXD5_TOBAC; protein REVEILLE 1-like isoform X2
TrEMBLA0A1S4BXE40.0A0A1S4BXE4_TOBAC; uncharacterized protein LOC107812899 isoform X1
TrEMBLA0A1U7VR700.0A0A1U7VR70_NICSY; uncharacterized protein LOC104219851 isoform X1
TrEMBLA0A1U7W2Q10.0A0A1U7W2Q1_NICSY; protein REVEILLE 1-like isoform X2
STRINGXP_009768903.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74472127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18330.15e-34MYB_related family protein