PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf08060g00005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 368aa    MW: 40785.3 Da    PI: 4.8894
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf08060g00005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.44.7e-2092142155
                       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                               + y+GVr++  +g+WvAeIr+p   + r  r +lg+fgta eAa a+++a+++++g
  Niben101Scf08060g00005.1  92 CNYRGVRQRT-WGKWVAEIREP---N-RgSRLWLGTFGTAIEAALAYDEAARAMYG 142
                               56*****999.**********8...3.35************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.19E-3092151No hitNo description
PfamPF008472.0E-1492142IPR001471AP2/ERF domain
SuperFamilySSF541713.92E-2093150IPR016177DNA-binding domain
SMARTSM003804.8E-3693156IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-3093151IPR001471AP2/ERF domain
PROSITE profilePS5103220.8593150IPR001471AP2/ERF domain
PRINTSPR003671.7E-994105IPR001471AP2/ERF domain
PRINTSPR003671.7E-9116132IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MSSDYSERNQ KMAILDQAPK MTSLPLDCSR KRKSRSRRDG TKNVEERLAK WKEYNQKLHC  60
VDDEGKPVRK VPAKGSKKGC MKGKGGPENS RCNYRGVRQR TWGKWVAEIR EPNRGSRLWL  120
GTFGTAIEAA LAYDEAARAM YGPCARLNLP NYPSSKELSK DDSSWATTSA SDSTAGSSLS  180
EVCPAGELKG FSEIKFEDGE GESRTDSATT AIHEAGTPLS SEKHEAKSKM GVVEAKEEPR  240
SIESIDHDML KSGQDYLDNL NWDEMFDVEE LLGMLDSAPA GAPSFMQDFG SIAGQKEQYA  300
YNNNQLSNSS FQQQNTDHKL LGGTQQMEQQ APIAVDYGFD FLKPGREEDL NFSLDDLALM  360
DLDSELGV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-1693150260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12833SRKRKS
23138RKSRSRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009764492.10.0PREDICTED: dehydration-responsive element-binding protein 2A-like
RefseqXP_016497887.10.0PREDICTED: dehydration-responsive element-binding protein 2A-like
TrEMBLA0A1S4C9G90.0A0A1S4C9G9_TOBAC; dehydration-responsive element-binding protein 2A-like
TrEMBLA0A1U7V8W40.0A0A1U7V8W4_NICSY; dehydration-responsive element-binding protein 2A-like
STRINGXP_009764492.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37012445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.12e-36DRE-binding protein 2A