PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf08050g00012.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 390aa    MW: 42703.4 Da    PI: 7.3664
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf08050g00012.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.11.9e-174695255
                       AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                              +y+GVr+++ +gr++AeIrdp     +  r +lg+f+taeeAa a++ a+++++g
  Niben101Scf08050g00012.1 46 RYRGVRRRP-WGRYAAEIRDPQ----SkERRWLGTFDTAEEAACAYDCAARAMRG 95
                              69*******.**********93....35999**********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.08946103IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.8E-2946102IPR001471AP2/ERF domain
SuperFamilySSF541714.97E-2146103IPR016177DNA-binding domain
SMARTSM003806.2E-3446109IPR001471AP2/ERF domain
PfamPF008479.7E-114695IPR001471AP2/ERF domain
CDDcd000185.55E-3046102No hitNo description
PRINTSPR003672.2E-94758IPR001471AP2/ERF domain
PRINTSPR003672.2E-96985IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MEDAMRRLNQ ESDLPLQTTT CTTKRSCGAN KRSLKDGGGS SVGAVRYRGV RRRPWGRYAA  60
EIRDPQSKER RWLGTFDTAE EAACAYDCAA RAMRGVKART NFVYPPPPTQ PTSTNDGLTF  120
LNIPNSFNYT KSFPYQAALK DLSNRQFFHS SNYSPSYGSG IKGVNGSTVA TATQKSNDSL  180
NMLLFRELLS SNSSNTNTTS LSSDTGFNNN NMPLYEQLPL MFSRYNTSIG LNSSTSNLMN  240
SSTFLPTTSN EIIPSSSVMT LPKIENVHSL NNNSSCVHDE SGMDFFPSEP SDSGLLEEAL  300
NGFFPKPKPV KSESFLSSTK GELSGVCNIP QQINDGLNSG FGFSQPSSSF PMYHQDFAAN  360
LPVSSGDNMM GDIFQYPDLL NIFAAKLQNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-2136102271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019264879.10.0PREDICTED: ethylene-responsive transcription factor ABI4-like
TrEMBLA0A314L3590.0A0A314L359_NICAT; Uncharacterized protein
STRINGXP_009765569.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.11e-13DORNROSCHEN-like