PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf08033g01007.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 267aa    MW: 29673.8 Da    PI: 5.4039
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf08033g01007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.62.6e-173685255
                       AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                               ykGVr++  +g+WvAeIr+p   + r +r +lg++   ++Aa+a++aa++kl+g
  Niben101Scf08033g01007.1 36 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTYENSYDAAAAYDAAARKLYG 85
                              69****999.**********8...3.35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.59E-173595No hitNo description
Gene3DG3DSA:3.30.730.101.8E-283694IPR001471AP2/ERF domain
PfamPF008475.6E-113685IPR001471AP2/ERF domain
SMARTSM003807.4E-313699IPR001471AP2/ERF domain
PROSITE profilePS5103221.433693IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-193694IPR016177DNA-binding domain
PRINTSPR003676.7E-83748IPR001471AP2/ERF domain
PRINTSPR003676.7E-85975IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MSSTYSVERK TKKITQATSR KGCMRGKGGP ENASCTYKGV RQRTWGKWVA EIREPNRGAR  60
LWLGTYENSY DAAAAYDAAA RKLYGADAKL NLPHLYNKQA QAQVQVQNSR PNTMGLDNAG  120
GPVSAPPTCN PAAVYNVASP STWSMGNDHT SFYFNNDFGN NSFSTVDQTS FQFLDINQTA  180
EEFDENSINQ NEGIGGEMWR DLNMNLPEID DSSIWEEAKA STSFQEAVSD PGLYACNLDD  240
EINYPPWCAL LYGKERKNMH ACKLVKV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-163793360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019257929.11e-168PREDICTED: dehydration-responsive element-binding protein 2D-like
TrEMBLA0A1J6IL771e-166A0A1J6IL77_NICAT; Dehydration-responsive element-binding protein 2d
STRINGXP_009767687.11e-166(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31552247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.13e-39ERF family protein