PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf07953g00014.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

SBP

Protein Properties

Length: 159aa MW: 18145 Da PI: 9.4948

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf07953g00014.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	95.6	4.8e-30	45	113	1	76
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +Cq+++C++dls+ k+yh+rhkvCe h+k+++vlv+gl+qr fhe+ efDe+krsCrrrLa+hnerrrk+ Niben101Scf07953g00014.1 45 CCQADKCTVDLSDSKQYHKRHKVCEYHAKSQAVLVAGLRQR-------FHEVGEFDESKRSCRRRLAGHNERRRKT 113 6************************************97.......7***********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	3.0E-22	39	100	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	23.829	43	113	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.57E-28	44	115	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	4.0E-21	46	112	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 159 aa Download sequence Send to blast
MEDNNDLFIL ATDNDDKKKR NPSYNRSSAY NNNEKIKGSS TTMRCCQADK CTVDLSDSKQ 60 YHKRHKVCEY HAKSQAVLVA GLRQRFHEVG EFDESKRSCR RRLAGHNERR RKTITTSSSS 120 DQCNAEDSSS RKAIIGTDSR QIINFQENAA AGYKQFQIG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-28	40	112	5	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Promotes both vegetative phase change and flowering. {ECO:0000269\|PubMed:10524240, ECO:0000269\|PubMed:16914499}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Negatively regulated by microRNAs miR156. {ECO:0000269\|PubMed:16914499}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019251876.1	7e-90	PREDICTED: squamosa promoter-binding-like protein 3
Swissprot	Q9S758	2e-31	SPL5_ARATH; Squamosa promoter-binding-like protein 5
TrEMBL	A0A1S4BHV2	6e-87	A0A1S4BHV2_TOBAC; squamosa promoter-binding-like protein 3
TrEMBL	A0A1U7VKT9	6e-87	A0A1U7VKT9_NICSY; squamosa promoter-binding-like protein 3
STRING	XP_009765576.1	1e-87	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA749	24	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15270.1	6e-31	squamosa promoter binding protein-like 5

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Xu M, et al. Developmental Functions of miR156-Regulated SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) Genes in Arabidopsis thaliana. PLoS Genet., 2016. 12(8): p. e1006263 [PMID:27541584] Ioannidi E, et al. Trichome patterning control involves TTG1 interaction with SPL transcription factors. Plant Mol. Biol., 2016. 92(6): p. 675-687 [PMID:27631431] Jung JH,Lee HJ,Ryu JY,Park CM SPL3/4/5 Integrate Developmental Aging and Photoperiodic Signals into the FT-FD Module in Arabidopsis Flowering. Mol Plant, 2016. 9(12): p. 1647-1659 [PMID:27815142]