PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf07913g00005.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

ERF

Protein Properties

Length: 191aa MW: 21491.4 Da PI: 8.5026

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf07913g00005.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	64.3	2.6e-20	5	55	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr+++ +g+Wv+eIr+p kr++lg+f+taeeAa+a+++a+ + g Niben101Scf07913g00005.1 5 KKFRGVRQRH-WGSWVSEIRHP-----LlkKRVWLGTFDTAEEAARAYDQAAILMSG 55 59*****9.******8.....335*******************987765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	1.14E-34	5	65	No hit	No description
SMART	SM00380	3.5E-40	6	69	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	4.6E-33	6	63	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	21.878	6	63	IPR001471	AP2/ERF domain
Pfam	PF00847	5.8E-13	6	53	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	3.14E-21	6	64	IPR016177	DNA-binding domain
PRINTS	PR00367	5.9E-11	7	18	IPR001471	AP2/ERF domain
PRINTS	PR00367	5.9E-11	29	45	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MVHSKKFRGV RQRHWGSWVS EIRHPLLKKR VWLGTFDTAE EAARAYDQAA ILMSGRTAKT 60 NFPITDDSDN KELKAKDQEF SSIPSPKALS EILHAKLRKC SKNSHIGVWQ KRAGPSDSKW 120 IMTVELQKKN NVNAAIEAEL NSSSTSSSSK NCGEIVEGIS IRSEMDEEER VALQMIEELL 180 HINGPCPTFD I

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	1e-17	6	63	14	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269\|PubMed:15319479}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By wounding in cauline leaves, stems, and siliques, but not in rosette leaves. {ECO:0000269\|PubMed:15319479}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009594389.1	1e-121	PREDICTED: ethylene-responsive transcription factor WIN1-like
Swissprot	Q3E958	2e-58	SHN3_ARATH; Ethylene-responsive transcription factor SHINE 3
TrEMBL	A0A1S4B922	1e-120	A0A1S4B922_TOBAC; ethylene-responsive transcription factor WIN1-like
STRING	XP_009594389.1	1e-121	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1352	24	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25390.2	1e-50	ERF family protein

Publications ? help Back to Top
Djemal R,Khoudi H Isolation and molecular characterization of a novel WIN1/SHN1 ethylene-responsive transcription factor TdSHN1 from durum wheat (Triticum turgidum. L. subsp. durum). Protoplasma, 2015. 252(6): p. 1461-73 [PMID:25687296] Sadler C, et al. Wax and cutin mutants of Arabidopsis: Quantitative characterization of the cuticular transport barrier in relation to chemical composition. Biochim. Biophys. Acta, 2016. 1861(9 Pt B): p. 1336-1344 [PMID:26965486]