PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf07895g04011.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 188aa MW: 21812.5 Da PI: 6.2742 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.7 | 3.1e-09 | 18 | 48 | 20 | 48 |
TTT...-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 20 Ggg...tWktIartmgkgRtlkqcksrwqkyl 48 G++ +W+ Ia ++ gRt++++k++w++yl Niben101Scf07895g04011.1 18 GSReefRWAQIATQLP-GRTDNEIKNFWNSYL 48 5557778*********.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.709 | 1 | 52 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.95E-9 | 16 | 59 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.0E-7 | 17 | 48 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-13 | 24 | 65 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.59E-6 | 24 | 48 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MARYSEKKEA VARRNTMGSR EEFRWAQIAT QLPGRTDNEI KNFWNSYLKK KLIKQGIDPN 60 THKPLSENQV RNETDCTDKA SMLLIQQLPN MSISANMEQP FHLSEASVDC EANRQLTEAS 120 RNQLVSKQVF DPLFLFEFQA NVDPSEYNSE LLGQSQQNLR PYDHQNQIEG NPNFGFCSML 180 KNEFIIYK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009773279.1 | 1e-108 | PREDICTED: myb-related protein 330-like isoform X1 | ||||
TrEMBL | A0A1U7WF53 | 1e-107 | A0A1U7WF53_NICSY; myb-related protein 330-like isoform X1 | ||||
STRING | XP_009773279.1 | 1e-108 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26660.1 | 3e-20 | myb domain protein 86 |