PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf07883g07003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | TCP | ||||||||
Protein Properties | Length: 182aa MW: 20766.1 Da PI: 9.3715 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 122 | 6.9e-38 | 21 | 136 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssasec. 73 +gkkdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l ++ s ss ++ Niben101Scf07883g07003.1 21 TGKKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKNAIDKLDELppwnpsidaadgS-SSGNNIv 104 79**************************************************************9999877666532.2223333 PP TCP 74 .eaesssssasnsssg...............k 89 e++++++++++ + + + Niben101Scf07883g07003.1 105 lEQQQQQNQQQEFQLQrqleennpsgwilphH 136 44444444443222223343334444444430 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 7.0E-34 | 21 | 124 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 32.785 | 23 | 81 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MKRATGGEIV QVEGGHILRS TGKKDRHSKV YTAKGPRDRR VRLSAHTAIQ FYDVQDRLGY 60 DRPSKAVDWL IKKAKNAIDK LDELPPWNPS IDAADGSSSG NNIVLEQQQQ QNQQQEFQLQ 120 RQLEENNPSG WILPHHQQTF YSQQPQGAVF PQREPLQSNS SHLIHAWEER PPISHISPAF 180 AY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 4e-23 | 28 | 81 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 4e-23 | 28 | 81 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009783353.1 | 1e-107 | PREDICTED: transcription factor TCP4-like isoform X2 | ||||
Refseq | XP_016448735.1 | 1e-107 | PREDICTED: transcription factor TCP4-like isoform X2 | ||||
TrEMBL | A0A1S3Y990 | 1e-106 | A0A1S3Y990_TOBAC; transcription factor TCP4-like isoform X2 | ||||
TrEMBL | A0A1U7WXM0 | 1e-106 | A0A1U7WXM0_NICSY; transcription factor TCP4-like isoform X2 | ||||
STRING | XP_009629629.1 | 3e-69 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6607 | 22 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 9e-49 | TCP family protein |