PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf07851g03001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARF
Protein Properties Length: 728aa    MW: 81249.1 Da    PI: 7.6555
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf07851g03001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.61.4e-24130231199
                               EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                               f k+lt+sd+++ g +++p+ +ae++         ++ +  t++ +d +g++W++k+iyr++++r++lt+GW++Fv++++L +gD
  Niben101Scf07851g03001.1 130 FAKTLTQSDANNGGGFSVPRYCAETIfprldytADPPVQ--TVIAKDVHGETWKFKHIYRGTPRRHLLTTGWSNFVNQKKLIAGD 212
                               89****************************997556555..8******************************************* PP

                               EEEEEE-SSSEE..EEEEE-S CS
                        B3  79 fvvFkldgrsefelvvkvfrk 99 
                               ++vF   + +++el+v+++r+
  Niben101Scf07851g03001.1 213 SIVFL--RAENGELCVGIRRA 231
                               *****..449999******97 PP
2Auxin_resp113.71.7e-37290373183
                Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                               aa  a+++++FevvY+Prast+eF+v++++v++a++++++ GmRfkmafetedss++++ +Gt+++++ +dp+ WpnS+Wr+L+
  Niben101Scf07851g03001.1 290 AAYLAASGQPFEVVYYPRASTPEFCVRASSVNTAMRIHWCSGMRFKMAFETEDSSRISWfMGTISSIQVADPIYWPNSPWRLLQ 373
                               577899****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.0E-37124237IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.45E-29125233IPR015300DNA-binding pseudobarrel domain
CDDcd100177.17E-23129230No hitNo description
SMARTSM010191.1E-23130232IPR003340B3 DNA binding domain
PfamPF023622.0E-22130231IPR003340B3 DNA binding domain
PROSITE profilePS5086313.451130232IPR003340B3 DNA binding domain
PfamPF065071.1E-32290373IPR010525Auxin response factor
PROSITE profilePS5174514.359618698IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 728 aa     Download sequence    Send to blast
MMNITKERQK EVYWIRQMEE VMEKCVDSQL WHACAGGMVQ IPPVNSKVYY FPQGHGEHTL  60
VNVDFSTLPR TPALILCRVA AVKFLADPET DEVYARIRLV PVGNKGNDFD DDNILGGSNE  120
TGTNDKPTSF AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YTADPPVQTV IAKDVHGETW  180
KFKHIYRGTP RRHLLTTGWS NFVNQKKLIA GDSIVFLRAE NGELCVGIRR AKRGGIGGPE  240
TPSGWNSASG NYCGFSAFLR EDMNKNGSLN SSGGSFRGKE RVRPESVIEA AYLAASGQPF  300
EVVYYPRAST PEFCVRASSV NTAMRIHWCS GMRFKMAFET EDSSRISWFM GTISSIQVAD  360
PIYWPNSPWR LLQVADPIHW PNSPWRLLQV TWDEPDLLQN VKHVSPWLVE LVSNMPVIHL  420
SPFSPPRKKL RLPPDFILDG QFPLPSFSGN PLRSSSPFCC LSDNISAGIQ RARHAQFGVP  480
LLDLHLSNKV QSGLLPPSFQ RVAADSKLTN CINKGQNDRN DNISCLLTMS TSSQMSEKTD  540
SVNTPRFLLF GQPILTEQQI SNRCSANAQE VQTGRDLGRI EMRNERFAFE QKGLQESVSS  600
ATYLWNRGHH AAGLGADIGQ CKVFLESEDV GLSLDLSVLG SYEELYRRLG NLFELERSDM  660
LTCVLYHDAT GAVKHTGDEP FSDFVKTAKR LTILMNPSSN IERKWITGLA TAERRLDSSN  720
RAGPLSMY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A7e-781041035388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019234295.10.0PREDICTED: auxin response factor 18-like
RefseqXP_019234296.10.0PREDICTED: auxin response factor 18-like
RefseqXP_019234297.10.0PREDICTED: auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A1J6KPQ10.0A0A1J6KPQ1_NICAT; Auxin response factor
STRINGXP_009797612.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59224115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.10.0auxin response factor 10
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]