PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf07822g00001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 624aa    MW: 69425.9 Da    PI: 5.6504
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf07822g00001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.53.5e-09508556348
                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                               +WT +E  +lv++v+++G g+W+ I r        Rt  ++k++w++ l
  Niben101Scf07822g00001.1 508 PWTIDEVVKLVEGVARYGAGRWSEIKRLAFascPYRTSVDLKDKWRNML 556
                               8****************************999*9************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.234501560IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.2E-14503559IPR009057Homeodomain-like
SuperFamilySSF466892.02E-16503561IPR009057Homeodomain-like
SMARTSM007172.3E-8505558IPR001005SANT/Myb domain
CDDcd116606.06E-19507557No hitNo description
PfamPF002496.4E-7508556IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 624 aa     Download sequence    Send to blast
MEANGAEIED SVVPVKNTLE ALEKEIADPV VYKLVRVDGD GRLVPATQDE IMVVEDLVED  60
DKCEPKLVPY TRQTTESCKT EGCLMERNPF QAPEGKLEYE NPKVVAEKSN ASGDKVPDLE  120
KIGASEKVTV HGLAPCSELS NIDPSGRTEI SFNSEDALNE DTPSTSASSS WKPDFSKLEG  180
KICLDNLTVK ELQETFKATF GRETSVKDKQ WLKRRISMGL TNSCDFSCTT FIIRDNLVVR  240
KGEEQISHTV KVRISADPEV GVAHSYSGGS LGDHDNRVNG DANFSGTDVP SSAYKSCNVT  300
KDLYAEQGTA KRVRKPTKRY IEELSEIEET SEKLPSSHKV SRYRFPCTES LMRPTTIVRS  360
NARPLFSRQD SLGGSGVQIP FVSRIRRSRP RENFTSLLKL QPSDTDMATR QVRSVFDVSG  420
PQEEDKRNND MIKTSSTPPG LTKQPLIAAC EKDEHYSGMR NVELENDMDE DNSDDNVELN  480
DGFEDNSDDN VIPVPTPKGG MRRKHHRPWT IDEVVKLVEG VARYGAGRWS EIKRLAFASC  540
PYRTSVDLKD KWRNMLKASF VQLPAEKGML NSRKQASVPI PAPILSRVRE LADMQGQFQP  600
ILSTGKSTGH ISGRSVHEAR SGYL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009782035.10.0PREDICTED: uncharacterized protein LOC104230838
TrEMBLA0A1U7X6E40.0A0A1U7X6E4_NICSY; uncharacterized protein LOC104230838
STRINGXP_009782035.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA118812023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.13e-95TRF-like 6