PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf07798g01013.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 267aa MW: 29970 Da PI: 5.6658 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.1 | 5.3e-10 | 151 | 199 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT +E +lv++v+++G g+W+ I r Rt ++k++w+++l Niben101Scf07798g01013.1 151 PWTIDEVVKLVEGVARYGAGRWSEIKRLAFascPYRTSVDLKDKWRNLL 199 8****************************999*9*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.269 | 144 | 203 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-14 | 145 | 202 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.91E-17 | 146 | 204 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-8 | 148 | 201 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 3.51E-19 | 150 | 200 | No hit | No description |
Pfam | PF00249 | 1.2E-7 | 151 | 199 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MDMATRQVKS VFDVSGPQED EKGNNDLIKT SSTPGWTYQS LIAACEKDEH YSGMRNVELE 60 NDMDENNSDD NVELNNGFED NSDDNVISVP TPKGGMRRKH HRPWTINEVV KXEDNSDDNV 120 ELNDGFEDNS DDNVIPVPTP KGGMRRKHHR PWTIDEVVKL VEGVARYGAG RWSEIKRLAF 180 ASCPYRTSVD LKDKWRNLLK ASFVQLPAEK GMLNSRKQAS VPIPAPILSR VRELADMQGQ 240 FQPILSTGKS SGHNSGRSVH EARSGYL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009602394.1 | 1e-141 | PREDICTED: uncharacterized protein LOC104097528 isoform X1 | ||||
Refseq | XP_016459219.1 | 1e-141 | PREDICTED: uncharacterized protein LOC107782799 isoform X1 | ||||
Refseq | XP_016459220.1 | 1e-141 | PREDICTED: uncharacterized protein LOC107782799 isoform X1 | ||||
Refseq | XP_016459223.1 | 1e-142 | PREDICTED: uncharacterized protein LOC107782799 isoform X3 | ||||
Refseq | XP_018626800.1 | 1e-141 | PREDICTED: uncharacterized protein LOC104097528 isoform X1 | ||||
Refseq | XP_018626801.1 | 1e-141 | PREDICTED: uncharacterized protein LOC104097528 isoform X1 | ||||
Refseq | XP_018626802.1 | 1e-142 | PREDICTED: uncharacterized protein LOC104097528 isoform X2 | ||||
TrEMBL | A0A1S3Z441 | 1e-140 | A0A1S3Z441_TOBAC; uncharacterized protein LOC107782799 isoform X1 | ||||
TrEMBL | A0A1S3Z4A1 | 1e-141 | A0A1S3Z4A1_TOBAC; uncharacterized protein LOC107782799 isoform X3 | ||||
STRING | XP_009602392.1 | 1e-141 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11881 | 20 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.2 | 8e-39 | TRF-like 6 |