PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf07798g01013.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 267aa    MW: 29970 Da    PI: 5.6658
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf07798g01013.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.15.3e-10151199348
                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                               +WT +E  +lv++v+++G g+W+ I r        Rt  ++k++w+++l
  Niben101Scf07798g01013.1 151 PWTIDEVVKLVEGVARYGAGRWSEIKRLAFascPYRTSVDLKDKWRNLL 199
                               8****************************999*9*************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.269144203IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-14145202IPR009057Homeodomain-like
SuperFamilySSF466895.91E-17146204IPR009057Homeodomain-like
SMARTSM007172.0E-8148201IPR001005SANT/Myb domain
CDDcd116603.51E-19150200No hitNo description
PfamPF002491.2E-7151199IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MDMATRQVKS VFDVSGPQED EKGNNDLIKT SSTPGWTYQS LIAACEKDEH YSGMRNVELE  60
NDMDENNSDD NVELNNGFED NSDDNVISVP TPKGGMRRKH HRPWTINEVV KXEDNSDDNV  120
ELNDGFEDNS DDNVIPVPTP KGGMRRKHHR PWTIDEVVKL VEGVARYGAG RWSEIKRLAF  180
ASCPYRTSVD LKDKWRNLLK ASFVQLPAEK GMLNSRKQAS VPIPAPILSR VRELADMQGQ  240
FQPILSTGKS SGHNSGRSVH EARSGYL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009602394.11e-141PREDICTED: uncharacterized protein LOC104097528 isoform X1
RefseqXP_016459219.11e-141PREDICTED: uncharacterized protein LOC107782799 isoform X1
RefseqXP_016459220.11e-141PREDICTED: uncharacterized protein LOC107782799 isoform X1
RefseqXP_016459223.11e-142PREDICTED: uncharacterized protein LOC107782799 isoform X3
RefseqXP_018626800.11e-141PREDICTED: uncharacterized protein LOC104097528 isoform X1
RefseqXP_018626801.11e-141PREDICTED: uncharacterized protein LOC104097528 isoform X1
RefseqXP_018626802.11e-142PREDICTED: uncharacterized protein LOC104097528 isoform X2
TrEMBLA0A1S3Z4411e-140A0A1S3Z441_TOBAC; uncharacterized protein LOC107782799 isoform X1
TrEMBLA0A1S3Z4A11e-141A0A1S3Z4A1_TOBAC; uncharacterized protein LOC107782799 isoform X3
STRINGXP_009602392.11e-141(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA118812023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.28e-39TRF-like 6