PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf07790g01007.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 732aa    MW: 80701.5 Da    PI: 5.7799
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf07790g01007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.98.4e-1962117156
                               TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                  Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                               +++ +++t++q++e+e++F+++++p+ ++r+eL ++l L+  qVk+WFqN+R+++k
  Niben101Scf07790g01007.1  62 KKRYHRHTQHQIQEMESFFKECPHPDDKQRKELGRRLALEPLQVKFWFQNKRTQMK 117
                               688999***********************************************998 PP
2START2261.1e-702504711206
                               HHHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT CS
                     START   1 elaeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdet 75 
                               ela +a++el+++a+++ep+W+ s      e++ ++e++++f+++ +      ++ea+r+s+vv+m++ +lve+l+d++ qW++ 
  Niben101Scf07790g01007.1 250 ELAVAAMEELIRMAQSGEPLWMPSLninstEILSEEEYVRNFPRGIGpkplaLKSEASRESAVVIMNHINLVEILMDVN-QWTNV 333
                               57899***************************************999********************************.***** PP

                               -S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESS CS
                     START  76 la....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellp 149
                               +a    ka+tlev+s+g      galq+m+ae+q++splvp R+ +fvRy++q+ +++w++vdvS+d+ ++ +    v R++++p
  Niben101Scf07790g01007.1 334 FAglvsKAMTLEVLSTGvagnynGALQVMTAEFQVPSPLVPtRENYFVRYCKQHADETWAVVDVSLDNLRPAS----VSRCRRRP 414
                               **********************************************************************976....8******* PP

                               EEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                     START 150 Sgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                               Sg+li++++ng+skvtwvehv+++++ +h+++++lv+sgla+gak+wvatl+rqce+
  Niben101Scf07790g01007.1 415 SGCLIQELPNGYSKVTWVEHVEVDEKAVHSIYKPLVNSGLAFGAKRWVATLDRQCER 471
                               *******************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.7E-2244117IPR009057Homeodomain-like
SuperFamilySSF466895.01E-1847119IPR009057Homeodomain-like
PROSITE profilePS5007116.1859119IPR001356Homeobox domain
SMARTSM003895.8E-1660123IPR001356Homeobox domain
CDDcd000861.34E-1662120No hitNo description
PfamPF000461.7E-1662117IPR001356Homeobox domain
PROSITE profilePS5084846.068241474IPR002913START domain
SuperFamilySSF559615.5E-37242473No hitNo description
CDDcd088752.17E-128245470No hitNo description
SMARTSM002342.2E-70250471IPR002913START domain
PfamPF018525.2E-59251471IPR002913START domain
Gene3DG3DSA:3.30.530.201.6E-5321471IPR023393START-like domain
SuperFamilySSF559618.24E-26491724No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 732 aa     Download sequence    Send to blast
MFKGNMFDSH HHLLDMSAHN KTPENEMDFI RDEEFESKSG TDIMEAPNSG DDQDPNQRPN  60
KKKRYHRHTQ HQIQEMESFF KECPHPDDKQ RKELGRRLAL EPLQVKFWFQ NKRTQMKAQH  120
ERSENTQLRN ENEKLRAENI RYKEALSNAA CPNCGGPAAI GEMSFDEQHL RIENARLREE  180
IDRISGIAAK YVGGKTLLNF PQIPPPEASC SLDLGFRPQS SLLGEMYSAG DLLRTAISGL  240
TDAEKPIVIE LAVAAMEELI RMAQSGEPLW MPSLNINSTE ILSEEEYVRN FPRGIGPKPL  300
ALKSEASRES AVVIMNHINL VEILMDVNQW TNVFAGLVSK AMTLEVLSTG VAGNYNGALQ  360
VMTAEFQVPS PLVPTRENYF VRYCKQHADE TWAVVDVSLD NLRPASVSRC RRRPSGCLIQ  420
ELPNGYSKVT WVEHVEVDEK AVHSIYKPLV NSGLAFGAKR WVATLDRQCE RLASAMANNI  480
PTGDVGIITS PAGRKSMLKL AERMVMSFCA GVGASTTHTW TTLSGSGADD VRVMTRKSID  540
DPGRPPGIVL SAATSFWLPV SPKRVFDFLR DENSRSEWDI LSNGGLVQEM AHIANGRDPG  600
NCVSLLRVNS GNSNQSNMLI LQESSTDSTG SYVIYAPVDI VAMNVVLSGG DPDYVALLPS  660
GFAILPDGST NRSGDNPEVI DNSGGSLLTV AFQILVDSVP TAKLSLGSVA TVNSLIKCTV  720
ERIKTAVTCE NA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in cell specification and pattern formation during embryogenesis. Binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to PDF2. {ECO:0000269|PubMed:11439135, ECO:0000269|PubMed:12505995}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019223778.10.0PREDICTED: homeobox-leucine zipper protein MERISTEM L1-like
SwissprotQ8RWU40.0ATML1_ARATH; Homeobox-leucine zipper protein MERISTEM L1
TrEMBLA0A1J6IN900.0A0A1J6IN90_NICAT; Homeobox-leucine zipper protein meristem l1
STRINGXP_009790281.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9322491
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21750.20.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Takada S,Takada N,Yoshida A
    Induction of epidermal cell fate in Arabidopsis shoots.
    Plant Signal Behav, 2013. 8(11): p. e26236
    [PMID:23989220]
  3. Liang Z,Brown RC,Fletcher JC,Opsahl-Sorteberg HG
    Calpain-Mediated Positional Information Directs Cell Wall Orientation to Sustain Plant Stem Cell Activity, Growth and Development.
    Plant Cell Physiol., 2015. 56(9): p. 1855-66
    [PMID:26220906]
  4. Katagiri Y, et al.
    The coordination of ploidy and cell size differs between cell layers in leaves.
    Development, 2016. 143(7): p. 1120-5
    [PMID:26903507]
  5. Seeliger I, et al.
    The AP2-type transcription factors DORNRÖSCHEN and DORNRÖSCHEN-LIKE promote G1/S transition.
    Mol. Genet. Genomics, 2016. 291(5): p. 1835-49
    [PMID:27277595]
  6. Schwarz EM,Roeder AH
    Transcriptomic Effects of the Cell Cycle Regulator LGO in Arabidopsis Sepals.
    Front Plant Sci, 2016. 7: p. 1744
    [PMID:27920789]
  7. Meyer HM, et al.
    Fluctuations of the transcription factor ATML1 generate the pattern of giant cells in the Arabidopsis sepal.
    Elife, 2018.
    [PMID:28145865]