PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf07761g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 127aa MW: 14500 Da PI: 6.2661 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.5 | 1.9e-19 | 23 | 74 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng..krkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+++AeIrd + +r++lg++ tae+Aa+a+++a+ +++g+ Niben101Scf07761g00005.1 23 KYRGVRRRP-WGKFAAEIRD----SarQGARVWLGTYNTAEDAARAYDRAAYSMRGH 74 8********.**********....33334**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 3.47E-23 | 23 | 82 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.551 | 23 | 81 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.40E-18 | 23 | 82 | No hit | No description |
SMART | SM00380 | 6.3E-33 | 23 | 87 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.1E-31 | 23 | 83 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.5E-15 | 23 | 74 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-11 | 24 | 35 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-11 | 47 | 63 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 127 aa Download sequence Send to blast |
MDEEPRHGRK MDTKNSGSGG EIKYRGVRRR PWGKFAAEIR DSARQGARVW LGTYNTAEDA 60 ARAYDRAAYS MRGHLAILNF PEEYNLPCSS SHFYTGSSSS REVLEFECLD DKLLEELLDC 120 DEQNKSK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 9e-36 | 11 | 113 | 1 | 114 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016440396.1 | 6e-66 | PREDICTED: ethylene-responsive transcription factor 14-like | ||||
Refseq | XP_018626630.1 | 6e-66 | PREDICTED: ethylene-responsive transcription factor 14-like | ||||
Swissprot | Q9LTC5 | 3e-39 | ERF98_ARATH; Ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | A0A1S3XKE1 | 1e-64 | A0A1S3XKE1_TOBAC; ethylene-responsive transcription factor 14-like | ||||
STRING | XP_009601836.1 | 2e-65 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23220.1 | 3e-27 | ERF family protein |
Publications ? help Back to Top | |||
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