PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf07751g01021.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 428aa MW: 44846.6 Da PI: 10.1086 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.5 | 1.5e-08 | 75 | 119 | 1 | 44 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 r++WT+ Ed l+ av++ G g+W+ I + Rt+ q+ rw Niben101Scf07751g01021.1 75 RKPWTESEDFELIAAVQKCGEGNWANILKGDFkGDRTASQLSQRW 119 789************************984222488888888888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.289 | 70 | 127 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.51E-12 | 71 | 125 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.6E-13 | 71 | 122 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.1E-9 | 74 | 125 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-7 | 75 | 119 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 1.75E-13 | 76 | 124 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 428 aa Download sequence Send to blast |
MLNGSTVEAP VTINIPNGQT SRTGVDYSLH GTSIHGTNIT VPVAVQKQPL STVAAAEGLD 60 THGPACTNLP PRRKRKPWTE SEDFELIAAV QKCGEGNWAN ILKGDFKGDR TASQLSQRWA 120 IIRKRQGTMV GNGSQLSEAQ LATRRAMSMA LNMPMGDKLK AACPISINMG QNSGARPRTS 180 PDSMVKVAAV VAGARVATPS NGASLLKTVE SKLAVEIPGG GPAVKSHVPV STNGLPSNVH 240 FIRTGLVSHS TGPSHASQPV SQQVLGHSLK CVSPAFQLSP TGTSSRSNAS AAPNAPICAP 300 VAELDENTKQ KLLQKSQTTA LSSAQSEKQV GVIGASGDKA LPPQVQQDKL LASSNPLIEK 360 VEDQTLSLGD EVKERRQEDQ DSVPGIQVQE KLIKDTSKSS KAPARTENGS ANGGDLNKAP 420 ARTQNGRE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 70 | 76 | PRRKRKP |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016474535.1 | 0.0 | PREDICTED: uncharacterized protein LOC107796293 | ||||
TrEMBL | A0A1S4ACY7 | 0.0 | A0A1S4ACY7_TOBAC; uncharacterized protein LOC107796293 | ||||
STRING | XP_009597578.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3434 | 22 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09710.1 | 5e-38 | MYB_related family protein |