PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf07751g01021.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 428aa    MW: 44846.6 Da    PI: 10.1086
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf07751g01021.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.51.5e-0875119144
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 
                               r++WT+ Ed  l+ av++ G g+W+ I +      Rt+ q+  rw
  Niben101Scf07751g01021.1  75 RKPWTESEDFELIAAVQKCGEGNWANILKGDFkGDRTASQLSQRW 119
                               789************************984222488888888888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.28970127IPR017930Myb domain
SuperFamilySSF466891.51E-1271125IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.6E-1371122IPR009057Homeodomain-like
SMARTSM007175.1E-974125IPR001005SANT/Myb domain
PfamPF002493.0E-775119IPR001005SANT/Myb domain
CDDcd116601.75E-1376124No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MLNGSTVEAP VTINIPNGQT SRTGVDYSLH GTSIHGTNIT VPVAVQKQPL STVAAAEGLD  60
THGPACTNLP PRRKRKPWTE SEDFELIAAV QKCGEGNWAN ILKGDFKGDR TASQLSQRWA  120
IIRKRQGTMV GNGSQLSEAQ LATRRAMSMA LNMPMGDKLK AACPISINMG QNSGARPRTS  180
PDSMVKVAAV VAGARVATPS NGASLLKTVE SKLAVEIPGG GPAVKSHVPV STNGLPSNVH  240
FIRTGLVSHS TGPSHASQPV SQQVLGHSLK CVSPAFQLSP TGTSSRSNAS AAPNAPICAP  300
VAELDENTKQ KLLQKSQTTA LSSAQSEKQV GVIGASGDKA LPPQVQQDKL LASSNPLIEK  360
VEDQTLSLGD EVKERRQEDQ DSVPGIQVQE KLIKDTSKSS KAPARTENGS ANGGDLNKAP  420
ARTQNGRE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17076PRRKRKP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016474535.10.0PREDICTED: uncharacterized protein LOC107796293
TrEMBLA0A1S4ACY70.0A0A1S4ACY7_TOBAC; uncharacterized protein LOC107796293
STRINGXP_009597578.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34342237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.15e-38MYB_related family protein