PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf07739g00014.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 366aa    MW: 40907 Da    PI: 9.9261
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf07739g00014.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.52.1e-103990147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                              +++WT eE+  l+ ++ ++G+g W+tI +          R+  ++k++w++ 
  Niben101Scf07739g00014.1 39 KQKWTSEEEAALKAGILKHGPGKWRTILKDPEfsgvlCLRSNVDLKDKWRNM 90
                              79***********************************66***********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.73E-1536108IPR009057Homeodomain-like
SMARTSM007178.7E-63893IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-133891IPR009057Homeodomain-like
PfamPF002492.8E-73990IPR001005SANT/Myb domain
PROSITE profilePS500907.3993991IPR017877Myb-like domain
CDDcd116605.27E-184091No hitNo description
PROSITE profilePS5150422.26148222IPR005818Linker histone H1/H5, domain H15
SMARTSM005265.3E-9152217IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.102.3E-13153227IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.74E-14153230IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005383.1E-6160215IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MSINRLYMVQ FIFFWWFVDM CSVSRLFLSF LRFLMGAPKQ KWTSEEEAAL KAGILKHGPG  60
KWRTILKDPE FSGVLCLRSN VDLKDKWRNM TVMANGWSSR EQARLAVKRT KQVPRQDGSP  120
VADTTTAESD EEAAEAQAAT TSSGSPRIHG SRKSMIRLDS LIMEAISSLK EPGGSNKTTI  180
AAYIEDQYWA PPNFIRLLSG KLKFLTAIGK LIKIKRKYRV APTSTPSDRR NLSSPFLDSR  240
QRIFSKVDRD YMDMLSTSQI DLEIANKMRN MTPQEAAAVA AQAVAEAEAA IAEAEEAARD  300
AEAHEADAEA AKAFSDATKT LHGRSAPRMV RHTSISIIGS PLPIFPFIVG RICVLPCPWN  360
HYWFSV
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019243172.11e-168PREDICTED: telomere repeat-binding factor 1-like isoform X1
RefseqXP_019243173.11e-168PREDICTED: telomere repeat-binding factor 1-like isoform X1
SwissprotQ8VWK42e-94TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBLA0A1J6J3I21e-167A0A1J6J3I2_NICAT; Telomere repeat-binding factor 1
STRINGXP_009799672.11e-167(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28642448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.31e-87telomere repeat binding factor 1
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Features of Arabidopsis genes and genome discovered using full-length cDNAs.
    Plant Mol. Biol., 2006. 60(1): p. 69-85
    [PMID:16463100]
  2. Schrumpfová PP, et al.
    Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase.
    Plant J., 2014. 77(5): p. 770-81
    [PMID:24397874]
  3. Liang SC, et al.
    Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2.
    PLoS Genet., 2015. 11(12): p. e1005660
    [PMID:26642436]
  4. Fulcher N,Riha K
    Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana.
    Front Genet, 2015. 6: p. 349
    [PMID:26779251]
  5. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]