PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf07709g01012.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 327aa    MW: 37270 Da    PI: 8.9828
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf07709g01012.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26043.68.2e-142523133098
                    DUF260  30 fanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                               f +vhk++Gasnv k+l++++e++r d+++sl       ++dPvyG+vg+++ l++q+ +++ +la+ k
  Niben101Scf07709g01012.1 252 FSYVHKIYGASNVGKMLQQVQEHQRADVADSL-------IKDPVYGCVGIVTLLHEQIYHVQCQLAKYK 313
                               899*************************9998.......59***********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031078.4E-10953IPR004146DC1
Gene3DG3DSA:3.30.60.202.3E-41353No hitNo description
PROSITE profilePS500818.021367IPR002219Protein kinase C-like, phorbol ester/diacylglycerol-binding domain
SuperFamilySSF578893.87E-1830115No hitNo description
PfamPF031071.1E-676109IPR004146DC1
Gene3DG3DSA:3.30.60.207.5E-580110No hitNo description
PfamPF031958.5E-13252312IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0035556Biological Processintracellular signal transduction
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MKYNEIYHFS HPQHKLRFEY SEFPFKCDGC KEVGIGSRYK CTTCDYDLHM HCAIPSASII  60
HPFYKKCSFQ FLSRPPGSVP RYCNACQKDI TGFLYHCKSC GFDLHPCCAK LPMVLDDGEV  120
KLYLYRKVSA SCHRCGRKGR SWSYRSTCKK YNLHVACVKE MLVDSWHEIY FGHANNNNNT  180
YNNNNNNSNN NCRKLENRIP SLKGTLQTHH RKSKGKVQKC CEMAGLALQF IISAVLGDPT  240
TLIAGVVGSL IFSYVHKIYG ASNVGKMLQQ VQEHQRADVA DSLIKDPVYG CVGIVTLLHE  300
QIYHVQCQLA KYKLKLTCSK LKESHSN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019256555.11e-169PREDICTED: uncharacterized protein LOC109234982
TrEMBLA0A2G3BVT91e-173A0A2G3BVT9_CAPCH; Uncharacterized protein
STRINGXP_009798303.11e-168(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA471722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.15e-18LBD family protein