PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf07693g00011.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 248aa    MW: 28094 Da    PI: 6.8079
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf07693g00011.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.85.4e-1884133255
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                y+GVr ++ +g+Wv+eIr+p++   + r++lg++ ta++Aa+a++ a++ ++g
  Niben101Scf07693g00011.1  84 TYRGVRKRS-WGKWVSEIREPRK---KSRIWLGTYPTAQMAARAHDVAALTIKG 133
                               69****888.**********843...6**********************99887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.32784141IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.4E-3184141IPR001471AP2/ERF domain
SMARTSM003808.1E-3484147IPR001471AP2/ERF domain
PfamPF008471.3E-1284133IPR001471AP2/ERF domain
SuperFamilySSF541713.92E-2184142IPR016177DNA-binding domain
PRINTSPR003673.0E-108596IPR001471AP2/ERF domain
CDDcd000184.01E-3085143No hitNo description
PRINTSPR003673.0E-10107123IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MEDQEQRINL QTQADYHRHG LNSPSNTTSS SSSFSSSFSS SNELTRKDYY SKRSSRKVQE  60
LVEINEIGEE KKKRKKDEDD KHPTYRGVRK RSWGKWVSEI REPRKKSRIW LGTYPTAQMA  120
ARAHDVAALT IKGNSAYLNF PYLAHLLPRP TSASSKDIQA AAAKAAAIIF PEENEEIRVE  180
PSRVELRSCH SSTTLFLENT QEELANSLSR EDDDTFFDLP DLSVDVVDQT DRYWVASGPV  240
RSGPGPDP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-17821421273Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17175KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019231547.11e-123PREDICTED: ethylene-responsive transcription factor ERF039-like
SwissprotQ8LBQ71e-49ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A314KHA71e-122A0A314KHA7_NICAT; Ethylene-responsive transcription factor erf034
STRINGXP_009791350.11e-109(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.19e-40ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]