PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf07663g04003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 820aa    MW: 89432.6 Da    PI: 6.7475
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf07663g04003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.72.7e-20126181156
                               TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                  Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                               ++k +++t++q++eLe++F++n++p++++r eL k+l L+ rqVk+WFqNrR+++k
  Niben101Scf07663g04003.1 126 KKKYHRHTPYQIQELEAAFKENPHPDEKARLELGKRLTLESRQVKFWFQNRRTQMK 181
                               79999************************************************999 PP
2START171.55.6e-543345581206
                               HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT- CS
                     START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetl 76 
                               ela +a++el+k+++ ++p+W++      e +n +e+ ++f++  +     +++ea +a+g v m++  lve l+d++ +W e++
  Niben101Scf07663g04003.1 334 ELAFAAMNELLKLVEIGDPLWFRNFdgsgEALNLEEYARSFPPCIGmkpsnFTTEATKATGTVMMNSLALVENLMDTS-RWVEMF 417
                               57899******************9999999*************99999**9***************************.****** PP

                               S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSE CS
                     START  77 a....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpS 150
                                    + +t++viss       g+lql++ae+q+ls lvp R + f+R+++q+ +g+w++vdvS+d  q+ ++  +   +++lpS
  Niben101Scf07663g04003.1 418 ScivgRTSTIDVISSSasgsrnGDLQLIQAEFQVLSALVPvRQVKFLRFCKQHAEGVWAVVDVSIDAIQEGSQPREAGNCRRLPS 502
                               ***************999*****************************************************998899999***** PP

                               EEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                     START 151 giliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                               g+++++++ng+skv+w+eh++++++++h+ +r++++sg+ +ga++w atlqrqce+
  Niben101Scf07663g04003.1 503 GCIVQDLPNGYSKVIWIEHMEYDENTIHNFYRPFIRSGRGFGAQRWIATLQRQCEC 558
                               ******************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.2E-22100185IPR009057Homeodomain-like
SuperFamilySSF466895.56E-20109183IPR009057Homeodomain-like
PROSITE profilePS5007117.734123183IPR001356Homeobox domain
SMARTSM003892.5E-16125187IPR001356Homeobox domain
CDDcd000861.50E-17126183No hitNo description
PfamPF000466.6E-18126181IPR001356Homeobox domain
PROSITE profilePS5084838.57325561IPR002913START domain
SuperFamilySSF559612.61E-27326558No hitNo description
CDDcd088751.34E-109329557No hitNo description
PfamPF018523.8E-47334558IPR002913START domain
SMARTSM002342.8E-39334558IPR002913START domain
SuperFamilySSF559615.49E-13603813No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 820 aa     Download sequence    Send to blast
MSFGGFIGSS SSGGNGGYGG SGVSRVVADS PYNNTMPTAA TIAHQSQLVT SPLTQPMLNS  60
SPLSLALKHK MEVIGDMGLI GENFDAVAMG RSSREDEYES RSGSDNLDGG ASGDDQDTPL  120
GKSSRKKKYH RHTPYQIQEL EAAFKENPHP DEKARLELGK RLTLESRQVK FWFQNRRTQM  180
KTQLERHENA ILKQENDKLR IENIAMKEAM RSPMCGHCGG QAILGEIHIE EHHLRIENAR  240
LRDELNRICA LANKFLGRSL GSFPGTMPPG MANSGLELAV GRNGFSAMNS IDTALPMGFD  300
FGNGLSSPLT MMSPRPTPSM ISTDVSFDKS MLMELAFAAM NELLKLVEIG DPLWFRNFDG  360
SGEALNLEEY ARSFPPCIGM KPSNFTTEAT KATGTVMMNS LALVENLMDT SRWVEMFSCI  420
VGRTSTIDVI SSSASGSRNG DLQLIQAEFQ VLSALVPVRQ VKFLRFCKQH AEGVWAVVDV  480
SIDAIQEGSQ PREAGNCRRL PSGCIVQDLP NGYSKVIWIE HMEYDENTIH NFYRPFIRSG  540
RGFGAQRWIA TLQRQCECLA VITSSAVPSG DSAVVCPSGR RSIAMLARRI TRNFCGGVCA  600
TFYKWEPIQT GTAEDTRLMM RKSIGDPGEP PGIVLSATRT IWLPVTHQRL FDFLRNEQTR  660
SQWDVLSHGG PMHQIVHIAK GQDLGNIISL FRANAAASDA NQNSMLILQD SCTDVSGSIV  720
AYAAVDTAEM NVVMSGGDSS SVTFLPSGFA IVPDCFQNSN NGMLGKKDNE GGSNGSLLTL  780
GFQILVNSLP AAKLTMESVN TVNALISRTL QGIKTAFQCN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019251816.10.0PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like isoform X2
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLA0A1J6I2500.0A0A1J6I250_NICAT; Homeobox-leucine zipper protein roc5
STRINGXP_009606532.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16262465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.10.0homeodomain GLABROUS 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]